GgaINT0126669 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:9065910-9067489:+
Coord C1 exon
chr17:9065910-9065967
Coord A exon
chr17:9065968-9067349
Coord C2 exon
chr17:9067350-9067489
Length
1382 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
AGACTGTGATTAATTTTCAGGTA
3' ss Score
7.01
Exon sequences
Seq C1 exon
TCGAGCAGAAGCAGAAATAGAATTGTTACAACAACTTCTAAAACAGAAGGAAGAACAG
Seq A exon
GTACGTTGAAGCAATGTTTCCTCTATTATATGAGGAGGGTGAAATATATGAGGAGTACTTCATTGGTGATCTGAAATGGCCGTGTTTAGTTGCCTGCTGTGGCACTTTTCTTCAAGTTTTCCCAAGTCACTGTGTTATTCCCTCCCCCTACACCTGCCAAAGAACAAATGGAAAACCTCCCTGACTAGGTTGTTTGAATTTGAAGAAGACCTGTTTGTTTCAATGTCTTCATGTGGCTGTGTATGTAAGTCTCAGTCATATGAGAGGATGGGAAGAACAATTTTGGTGCATCAAAATGGTACATGCATTTTGCTGAGTGAGCATTTCTGTAGGAAAACATAAGATTGTTTGAAAATGTTCTACTGTAATCTAATTTAAACTGAAGTGCTTTGCTTTGATTTAAACTTACTTAAAACAGCTTCAACATGAAATGGGGAAAGCTGGTGAGAAGACTGCATTGAGCTCTCAAAAGTTAGAAATTGATCAACTAAATGACACAGTGGAGCAACAGAAAGCAGAAATTGACCACTTAAGATGGTTGTTGGATGATATCGGGGCAGGTAATCTCTTATCTCTATCTCCTGCAGCTATGGAGAAGCAAGCTGTTCTGCATCCATGCATATTTCTCACTAACATGAGAAGCTGTTCAGAGCTCTAAGATTTTATTCTAGGAGAACAAACAGGAAACCATTCTGTACAGTTCTTACGCTACTTAGGATACATTCAGTCTCTGAATCACTGTGCTTCAGTGGATTCTCTATGTATGAAGCAAGGAGCAAGACCTAACCCTTCTGAAGTATTGTGTATTTGAAAGACACAAAGTACACTTATATGTAGTGTGTGGGTCTTTGCTACTTTGAATTTTTGAATGGAGGAAATGGATGGTTAACGGTCTGGTACTTCTGGTTTTCTAGTCTTGCCAGGTGACATAACACAACCTTTGTCAAACTTAGTGAAATTCTATCTCAGTTTTAACACTGGAATTGTGCTTATTTTTCAGTATGTTTATTTACTCTCCATTGATTTGTATTAACAACACTTTTAGTGACTGTTCAGATAAGGCTGATTGTGTTACGTGTTATACTGTGCTAGAATGTTATCGGAGATGAGCATGGAAAAAAGTTCAACAGTTGCCTGTATATGAACTTGTAAATTTGTCATTTTAAGACTGTAGAAATACAAGGGTCAGTGAGTATCTACATCACAATGTAATAATTAAAATTTGATTGTTTGCCTTTTCACAATTTTTTTTATATTGTTTCAGATTAACATGATAAAAATGAGGAAAAAGCTTTGAACTGTCTCTTTAATTACAGGTGATTACAGTATCTCTGGCTTAGTTATCTGTCGTACATGCTTATAAGACTGTGATTAATTTTCAG
Seq C2 exon
GTAACAAGGATGAAATTGACAACTTACAAGAAGAAATTGCAGCACTCAGAAGTGCACTCTCATACCAGAATGATTACATCACCAATATAGCAGATCCACTGAAAAGAAGAGGATACTGGTATTATATGCCACCATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513:ENSGALT00000002299:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGCAGAAGCAGAAATAGAA
R:
CTGTGATGGTGGCATATAATACCAGT
Band lengths:
198-1580
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]