BtaINT0041499 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019807 | COL27A1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MTP1]
Coordinates
chr8:105183413-105183672:+
Coord C1 exon
chr8:105183413-105183430
Coord A exon
chr8:105183431-105183636
Coord C2 exon
chr8:105183637-105183672
Length
206 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CTGTTCTTCTCTTCCTCCAGGGT
3' ss Score
12.16
Exon sequences
Seq C1 exon
GGATTGCAAGGTCCGAGG
Seq A exon
GTGAGTGGGCTGGGGTGTGAGGGCTGGGGGGATGGTGGAGTCAGGGGGGCGGGCACTCTGGGCTTTCCTGCCCGTGACCAGTCATGTCCTGGGACCTCGGTCTGTACGCAGGTGGCCACGGTGCCTGGGTCTCAGGAGGAGGCCTGGGCGGGGTCGGGGGATGAGAGGCCTTTGAGCGGGGCCTCACTGTTCTTCTCTTCCTCCAG
Seq C2 exon
GGTCCTCCCGGTCCCAGAGGGCAGCCCGGCCCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019807:ENSBTAT00000001200:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(8.2=100)
A:
NA
C2:
PF0139113=Collagen=FE(18.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]