BtaINT0041502 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019807 | COL27A1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MTP1]
Coordinates
chr8:105187133-105188201:+
Coord C1 exon
chr8:105187133-105187198
Coord A exon
chr8:105187199-105188032
Coord C2 exon
chr8:105188033-105188201
Length
834 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCCA
5' ss Score
1.44
3' ss Seq
ACCCTCTTTTCTCACAACAGGGT
3' ss Score
9.59
Exon sequences
Seq C1 exon
CAACAAGATGACCTTGGGGCAGCTTTCCAGACGTGGATGGATACAAGTGGAGCACTGAGAGCAGAG
Seq A exon
GTGCCACCCGGGGCCCTGCCCACGTGGGGTCCCTTCCTTGGGGGGGGGTGCAGAAATGATGACCCACATGTGGTCAGTGGCCTCCAGGTGACCCACACTGAGCAATTCACAGCCAGCAAGTGACCCAGAAGCAGGGCCGAGGCCTTTTGCTCTCCTCCTGAGTCAGGTAGAGATGTCAGAAGCAGCTTCTTGGTTCAGTCCCAGAATCCACCAGAGGCAGGAAACTTGTCCACAGGCTCTGCTAAGACCCTGGCCAGTGGTCACCTCAGCACTAGGATACAAGGCTGAACAGGGCCCTGGGTATCCTCTGGTCAAACCCTGTCAAGAGTGTCCTTTGCTGAGTTGCTTTCCCCCCACGATGGGGGACTCACTACCTATCAGCTCAGATCGTCAGACTTTTCCATTTGTGCCCTGAGTGCTCTCTCCAGGCTCATGAGCCAGGGGAAGGGCAGATAGAAAAGCTTGTTATGTTCCTTCCATTCTGGGGAGTGGGGGACGGGGTAGTCAGTGGAAAGGAAGTCCTTCACCAACTCCTTCCTGAGGGATTTGGGACCCCTTCCTTGACTCCTCGCTCACAGGACCCTCCTATTCTGCAGCAGAAGCCAGGCTGACTGTCCACATCTCTCAAGCCCCCAGGCCCTCTAGGTAGATCTGCCCCTGGCCACCGCTGGTCCCCAGTTTCTTTATTTGTTAAGTGGAGGGACACCCAAGCATAGCCCCTGCAGGGAGCTCAGATGTCTCCTTAGTGGCAAGAACTTGGGGCAGTGGAGGCTTAGAGCTCCAGCCGGACAAGGACCTCAAGGGCCCGACGGCCACCCTCTTTTCTCACAACAG
Seq C2 exon
GGTTACAGCCATCCGGACCGGCTGGTGCTGGACCAGGGAGGGGAGATCTTTAAAACCTTACACTACCTCAGCAACCTCATCCAGAGCATTAAGACGCCCCTGGGCACCAAAGAGAACCCCGCCCGGGTCTGCCGGGACCTCATGGACTGTGAGCAGAAGATGGTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019807:ENSBTAT00000001200:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=NA C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0141013=COLFI=PU(38.6=47.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGATGACCTTGGGGCAGC
R:
TCCACCATCTTCTGCTCACAG
Band lengths:
230-1064
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]