BtaINT0041508 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019807 | COL27A1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MTP1]
Coordinates
chr8:105133044-105142885:+
Coord C1 exon
chr8:105133044-105133097
Coord A exon
chr8:105133098-105142840
Coord C2 exon
chr8:105142841-105142885
Length
9743 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAC
5' ss Score
7.56
3' ss Seq
TGGTTTCTTTCCCTCCGCAGGGA
3' ss Score
12.46
Exon sequences
Seq C1 exon
GGCGACATGGGCTTGCCCGGGCTCACTGGGAATCCAGGACCCCTTGGACGAAAG
Seq A exon
GTACACTTTGGTGCTGATGCTTCACTTTGTCCAGTGGGTTTCCTAGCAAGCGGGGTCCTCAGACAGGAGTGCTATGTACTGCCTCTCCCCAGCCCTGGCCCAGATCCTCGGCAGTGGGCTGGTGGCCAGAGGGGAGAGAGGTTTCTGAGGGTCTGTGCTTACCCGGGGGCGTGGAGCACCTTGGCTTGGAGCAGGTCCCCCCACCATGGTTAGTGAGATGTGACAAGAAGTAACCCTGTCCTTCCTTTTGCATCCCAGCTGCTCCAGGGAGGTCCTGAGGGTGCTCTTGGTGGTGGAAGGAATATTGTCAGAGCCAGGAGTCCCCATAGGTTCGGCTCCACCTTCCATGAGCTGAGTGGCCTGGGACCTGCACATCCCCTCCCTGAGCCTCAGCCTTCTACCTGGAGTGACCATGACCTACCCCGTCCCCTGTCCCTGATCTCTCGGGGTCTGTAAACCACGAGCAAGGTCTGCAGCCTGGAAGTTGAGCGAGTGGGCTCCGGGGTCAGTTGCATCTGGACTCCACTCCCTGCTCCACCATTTGCTCGCTGTGTGACCTGGGGCAAGTCAGTAACCTCTCTGGGTCTAATATCATCCCTCCCATATACTGCAGGGAAATCTCTATAGAGGCAGAGTTCTCTGTGCATTTTGAGCTGTTCTCATCCTCCCCGACCTCATCACTGCATCAGTCAGGCAGGGGGTGTTACCTCTTTGGGGGAAGAGCTGCCATTTTCCTAGGTGGTGGGTCTCTGGCTGGCTGTGCCCCTGAATTCCTCTCTGGCTTTGCAGCTAGGGTGAACCATCCTTCAGACTCAACAATACTTGTGCCCCCTCCAGGAAGCCCTTCTAGAACCCCAGCTTTTGGGTCTAGAGCCTCTACTCTGCTTGAAGACTCAAAGTCCCTCTAAACTGCGTTCTTTTCAGCCCCCAGACCAGCCTCACCAACCAGGACATGCAAGAATGGTTTGTCGCTCTTCCTGCAGAGCCTCGCTCAGGGCCTGTGTGTAGTAGGTGTTCAGGAAACAGGGAGGACAGTGCAGGGTCAGGGTCAGTTACTATTTTTGCAGGGAAACCCCCCATTGCTGATGGGTTTTCAGTCTATAGATCAGCCGAGGGCCGCAGCTTGAGCATCCTTGCTGGCTCCCAGCTGTAGCCACAGCTGCCCTCTTCCTTGGCCATCTGGTTCTCATTTGGGCAGCCGTAGCATCTCCTGGCTCCATCCTGTCCATGCTCTGAGGGTCCCCATGGCACAGGTGGACATGGAACATGACTGCCCCCGGACCCATTCTCCTCCAGCCTCTTCGGCCAGAACAGGTCCTCCTGCAGATCTGAAGAAGCCAGACCCAGACAGGAGTGCGTGGCTGTCTGTGAGCTGGGGAAACGTGGTCTTTTCTGGCTCAGAGAACACAGAGGAACTCCCTCTCCCCGCTCACTTCCTCTCTGGGCTCCAGCAGTTTCTGATGGATGAGGTGTGAGTGGAAAAGTCTTCTTCCAGTCCTGGCTCATAAAGCAGCCAGTGGTGGTCTCGCTTGGCACGGGAGTAGGAATCTAGCAGAGGAGGTGGAAGATGGAAAACCAGACGGGACTGGCTCCTGCCTGGGGTTCTAGCCTTCCTGCTCTTAGCAGATGTCCAGGGAGGCCCAGAGTCCCCAGCGCAGGGGAACCAGCTCACCTGAGCAGGGAGAGACATCTTTTCTAAATTAAGGAAGAGTCTCTGTGTGGTAGGAAAACGATTTGGCAAAGCCATTTCCACCGAGTCCCTCTGGCTCCTGTCGAGGCAAACACGGGGGAGTTTGGTCTGGCAGGTCAGTGTCACCTAATCACAGGGAGTGGTGGTGCTCAGGTCTCAAGGCAGGGACCCCTGACCAGTGGTGGGGGTCAGGGAGGCAGGCCAATGGGGTGGGCAACCTCACCTGGAACCATCCCTGTTTGTCCGTAGTCGCTCCTCCCACAAGCATCTTTTGGTAACAACGGTAGCCATTTGGCACTGATCCTGCTGAGCGGTTTGCCTGCATCATCTCATGTGGGGAGCCTTGAGCGAGAAAGCACGTCAGTGGCTGAGAGGCGAGGCCAGTGTGCCCTTTGCTCATCAGCACGTTGAATTTTGGTGTCACCTCATAGTGACACCAGTAGCCCTATTCATTCATTTCTTCAACAGGATGGATTGGTTGCCTATTGTGTGTCAGGAAGTGTGCAGGCCTCTGAGCTGAATAGAGACAAAAATCCCTGATCCTCAGAGTTTGCAGTCTTGTGGGAGGAAGGAGGCAATAAAAATGGTAAAAATACGAGGTGTGTTAGAAGATGAAAAAGGCCATGGAGAAAAGTGGGCAGGAGAAAGGGACTTTGAGTTGGGAGTTTCTCATATTGACTAGTGTGACAGAAAGGCTTGCTGTTCCTCATCACATCGCTTCCTCACAATAGCCTCCAGCAGTTAAGCAGTATTATGCCCATTTTACAGCTGAGAAAACTAAGGCCCAAATAGGTCTCATTCATTCATTCACTCTTCCAGTCATTGCACAAAGATGTACCTGTGTACCTGGCCCTTTGCTGACACAGGTGTTAAATGCCAATGAGATCACTGAGGGCTTTCGGAGAGTGAAGTCTACAGCCCTGGTTCCCAGCCCCTCTGTGTGTGAGAACCAGTGCGGGAGTTTGTCCTTCACCTCCACAGGGGTTCCAATTCAGCTGGTCTCAGTGGACTAGAGCACTAGATCATCACGTGCAGCCAAGGCCGAGAGCCACTGGGCTAGTGGACAGAGCTTCCAGGGTCACTAAATGGCAGACCTGTGATTTGAACTCAGGTCTTCTAACCTGCAGGCCCTTTCCCTCTCTACAATGCTGATGGAAACAGTTTCTTACATAAGAGCCTCCCCACCTTCAATAAGGCTCCCTTCTCCGCATCTGTCTGCGATGCTAGCCAAGGGACTCTGCTGAGCTGATTCCCAAGGGCAGGTCAGACACGCCTGGATGGAATCCCAGCTCTGTCCCCCTCCTGCTCTGTGAGCTTGGGCCAATGGCCTCAGTTGCTTTGTGCAGTGTTTCGGAGGGTTAAATAAGATGCTATGTCCTCAGCACCCAGCGTGAATGAACGAATGATCGTGAAGAAGCAGCACTGAAGAAGGTCTTGCCCACTTGGTCCCATCAGTCATCTTGCTTAGTTACCAGTTAACTGCCCTCCCTTGTGGCTCAGATGGTAAAGAATCTGCTTGCAGTGCAGGAGACCTGGGTTTGACCCCTGGTTTGGGAAGATCCCTTGGAGAAGGAAATGGCTACTCACTCCAGTATTCTTGCCTGGGGAATCCCATGGACAGAGGAGCCTGGCGGGCTATGGTCCATGGGGTCACAAAGAGTCAGACATGACTAGGGACTCACACACACACACACACCCTCCTCTAGCCCAGAAAGCTGGAGAGCCCTGTTTGCTCCTTGGGAGGGCAGAATCCAGTGCTGTCCCTAGTCTAATCCCCCTGCCTTCGCTCCTATAGAGCAAGCGCTTCTCAACTGCCCCCAGGGAACAGTTCACAGTGGAGGCATTTTTGGTCATTACCCCCTGGGAGGGGGCGCTTCTAGCTTTAAATGAGTAGACGCCAGAGATGCTGTTACAGATCTTGTGATGTATGGCACACACACCCCACCCACAGCAAAGGCTGATCCAGCTGCGGTGTCAGTGGTGCCAAGACCAAAGAATTCTGCTGTATAGAAACCTTCGAAGCATCCAACCCATGTGCCCTGGGCCTTCCTGCCTCCCTGTATTTGTTTATGCTGGGCTCTCCCCTGGCAGGCTCTCTCCTCCCTACTCATCTTGATGTATCAGTCTCGATTTTACCCTCACATGCCATCTTTTCCAAGAGTATCTGCCCAGCACCTCCAGGCAGAATTCGTATCTGCCTTCTCACACCAGCGCATTTTCTCAGCCTCTTTGGGACTCTGCATTTTCTGGCTAGCGGGCAACTCACTGATATTCTTGGCATAGTTGTCAGACTAGACCAAGTTCACAGAGGAGGACCTCTTCTTCTTTGTTCCTCATGTGGGGCTCAGCACAGCGCTGGACACAGACATCTGCTCTTTCACCCCACACCTCCCTGCCTCCTCTGCCCATGGAAGACATAACGAGTTGCTCTTTCTTGCCAAGCCTAATTCAGCCTCAGACTCTTTCTTAACACATTGCTCCAGGCAGACATCACTGATGGAATAAAGTTGGTACCCAAATTGAAACTTCCTCTTGGCTCCCTCCCGCCACCCTCACCCTACCCATAACCCCTCCCTATGCCTTCTGCGTTGGCCACTGTCTGAGAGTCTGTAGTAAAGTGGGCAGGCAGAGGGGGTCATCTGGGGATGTTTTTGGGGGTGTGTGATTGACAAACCTTAAGGCAATCTCCTGCCTTTCTGCAGAACTGCCAGTTCTATCTGGACATAGCACCCCCAGTTCCATGTAGCACCCCCAGTTCCATACTGCACCTCCAGTTCCAAGCAGCATCCCCAGTTCCAAGCAGCACCCCCCGTTCCATACAGCGCCCCTACTGAGAACCTCCTTGGGTTCCCCCTGTTGCTGAGCTGTTCTGATCTTCTGGTGCCTACACCCACTCTGTTTCTTTTTTTTTTAAGAACATTTATTTATTTAAAAGAATTATTTATTTTAAATGGCTCTACTGGTCACATCGTTGCGGCATGTGGGATCTTTAGTTGTGGCATGTGGGATCTAGTTCCCCAAACCCAGGATTGAATCCGGACCCCCTGCTTTGGGAGCACAGAGTCTTAGCCACCAGACCACCAGGGAAGTCCCTCCGGCTCCGTTTCTGAACTCCGCTGACCCTCTGCTCTCCAACGAGGCTCCTCCTTCAAGCCTCAGCTTACACCACCACCTCCTCTGCTTGGGTGTCTGTACTCCCCTAGCAGTCAGCGCTACTTTGTCCTGCTTCGTATGTGTTTAGTGCCCATATCCTGTTCTAGAAGGTAGGGAGCAAGTTTGCTTTGTTTACTTGTGTGTTCTTAGTGCTAAGATAGAGTCTGCCACGTTGGTGGGGCTTAGCAAACCTTTGAATGAAGGAGTAACCAGATGAATGAAGGCTCCATACAGAAGCTCTACCTCCCTGCTCTGACCTCTTTCAGGTACCCACTGAGCAGAGTTCAGCATCAGAGGCCTGACTGTACTGGGATGGACTGTGCTTTCGGACAAGCCACACATCACATTGCAGAATCCCATAGAATCCTATCGTTTTGGGGCCAACAGGGTGCTTTGAGAGGCCAGCTAGGGAAACTGAGGTGCAGAGAGGAGCAAGAACTTGGCGGGTATGGTGTCATGGCTCACTCCGCCTCTTGAAAGATGTTTCTTCCTCCTGACCCTTTCTATTGAGGGCCTGTCCATCCTGCTGGCTGCCCAGTGTGGCCTGGGAGCTGCCAGGGTGGTAGAGAAGTTTAGCCGGAAGCCTCGTGGAATGCTGAGTGGGTCTGGTGAGCTTTATTCTACTGCAAGAGAAGCTGGGGCCTCGTGCAGGCTGATATGGAGCCTTCAAGATCAGTGTGCAAGGGGGGATCCGCTGAGAGGTCTAGGCTGGTTCTCAGGACCCCCAGGAAGGGACAAGACCCCCCCTCCCCTCCCTTCCCAAAGCCCAAATAGCATCCCAGCCGACGGGGAGACTGTCTGCAGTAACAGTGAGGTGATGTCTGGTTTTTACTTGTGCATTGTAAGCAATGATTAATCTGGCTCCCAAACCAAAATATAGCCCGAGTTCTATTATAAACACGGGTCCTGTAGAGACCCGCCTGCCGAGAGCCAGAGGCCCCTTGCAGATTTCTGTGGTCCCTGGAACTCCCCTGAAGCCTCTGCTCTCCCCTCGTCCCGGTCAGGCAGCCATCACCCGTGGGGAAATCACTGCCCGTGGGTCCACCTTGCGGTCAGCGCCCGCCATGTAATTGCTGGGGCCCTGGAGAAGGTAATGGTTTAGATTCTTCCAAGACCTGGGGCCCTGTCATTTGAAGCTATTTCACTGGCCCCAGCTTGGTAAACACCGTTAAGGTGCTTTCCAGGGAGCATAGGAACCCCCACCCCCACCCCAACCCCATGTCTTGGCTGTGTTCAATCTCAGCTGTTCCCAGTCCGCTAACAGAAACACGGGTTCGTGGCAGTGTTCAAGGCCCTTCTGGGTCCATGGTTTGGAAAAGACCTACGAACTGTGGCCTTCTGGACAAAGCCCAGCCCAGTGGGTCTGGAGTCATGGGGAATGGTCTGGGCTTGGCCATAACTTGCCAACTAGCCTTTGGCGAGTCTGTTTACCTGTCTGAGCCTCGGTTTCTCATTGTATCCAATGAAGGAGGCTGTGAAACTGATGGCTTAGGTCCCTTCCAACTCAGACAGTGGGTTCATGATGCTACAGTGACCCACAAGCTCAGACCTGGGGAGGTGAGTCTGTAAGAGGGTCTTTCCCTTGGTGACCCTGTGACTCTTCCAGGTGAGCTCGGGTCTCAGCAGTTAGGACATAGGACTTCGCAGCCTGCTGTGTGGCCTCTTTACCTCACTAAGCTTCAGTTTCCTCATCTGGCATCAGTTTCTTCATCTGGCAAGTGGGCATGGTAATTCCTGCCTCTCAGGGATGATCGCAGGTGTTGATGAGATGGTGCACCTAGGCCTTAATGCGGGGCCAGGCATAGAGTGAGTCACTGTTCACGTCCCCAGTGGTCATTCACTTCCTTTTCACTGCATCCTGAGTAGGAGATTTACTTGAAATCTCCTCCTGGGATTTCACTGACAAGTCTGCCAAAGCATTGGTTTCTAGCTTCTTTGTGGCTGCAAGGAAGCCAAAGGAGCACGTGGTGCGCAGGGCTCCCTGGACCCCTCTCGCTTCTCTTGGAATTCTTGCTCTGTTATTGCACTGGCTCCATTATGGCACTGAGGCAGCAGAGGATGGCAGAGAGAGGCTCAGAGAAGGCTTAGAGCTCAACCCCTGGGCTGAGTCACACAGCTTAGAGCTCGAGGCGCCACTCAGCTCTCCATGGGAAAAGGCTTTGCTTGTTTTTTCTCATCGGCAGGCTTCAAGTGGAGAAAGGATGATGGTCATACATCCTGTCCATGACACATCCCTGCTCAAAACCCTCCTGTGCTTTCCTGCCATCTTTCCACCTGGCATGCTCTGGCTTCCTGCTTCTTTTCTGACCACCTGGTCACTCTGCCACTCACCCCTCACTCATTCTGCTCCAGTCCCACGGGGCTCATTCTTTCTTGAGAGCGTTCTCCCTCAGGGTTTCTGCCCCTATTGTTCCCTCTGCCTGGGAAGCCTTTCCCCAGAGAGCCAGCCCTGTGTCCAGCCCCGCTGCCTGCCACGGTCACCACCCTGCCCAACATGGCCCTGCTCTGTCCTCTGACTCTGCTCACTTTTCTCCATAGCGCTCCATAGCACTCTCCATAGCGCCATAGCACATGCCACACATTATCGCTTTTTTAGAATTTCGTTTTCAGTGATGATGAGAAAACACATCACGTACATTTTTCCATCTGAACCCTGTTTGTGTGTGCAGTCCAGCAGTGTTGGGTATGTTCACACTGTTGTGCAATCGATCTCCAGAACTTTTTCATCTTGCAAGACTGAGACTCTACCCCCATGTGAGCAGATCCTTGAGACATTACGTTTTATATTTATTTGTTTTTGTATCTGTTTAATTAGACTGTAAATTCCGTTAAGGCAAAGGATCTTGTCTTCTTGTTCACCCGATGCCTAGCATGGGGCCAGAGCATGAAAGTGCAGCAAATGTTTTGTTGCATGAATGAATGAAATATAAAGATCATGCTACTAACAGCAGCTGGTCTTTATGGGGCCGTTGACTTCAGTGTGGTGCTAAGTGCTTCACACATTATATCATACAGTCTATAATGCCAACCCCTGAGAACCCCATTTTGCAAGATGAAACCATGGCTCAGAGAGGGGGCCCCAAGGCCTCCAGCCAGTAGGGAAGCAGGATAGGGATCCAGATTAATCTGAAACAAGAGATCTTACCCACTCTGCATGCTGGCTGCTGACTGTGGCCGCTGCATCACTTTGCCCATTGGGGAAGAATGGCATGCTGGCGGAATCTCACCCAGCCGTGCTGCATCAAGATCATGGGCCCCAGGTCTGAGATGCAATCACAACGCTGAGCAGTCTCGAGGCGTGAGTAGGTGCAGAAGGAATGCTCGTAAACTCCCCAAACCTCTTGGATCAGAGCGATGCTGTTTATAATTAAAGAGTGCCGCTTTCTAGGGGTCTGTGGGGGTGCCAAACGTGTGTGCCTGTGGGTGTTTGTGGATGTGCATGAACTGTACATGCCCAGGGAGGCTGCAAGGCTCTCCGTGTGGCCTCCGGTGTCAGAAGGACCCAGTGGTGAGCTTGAGCTGCTGCTCCTTAGTAATGGGATTCTGGACAAGTGACTTCCATTCTTCAAGACTCGGTTTTCTCCTCTGTAGGATGGAGATGATATAAAGAACAGTGGGTAGAAGGGGTTCACAGGCATCGTATGTGTGTGTGTGTGTGTAGTCTAGAGTCTTGTTAATCACCAGCCTGGGGCAGCCCTAGGGCTTCTACCTGCAATGCAGGAAACCTGGGTTCGATCCCTGGGTTGGGAAGATCCCTTATAGAAGGCAATGGCTACCCACTCCAGTATTCTTGCCTGGAGAAATGCATGGACAGAGGAGCCTGGTGGGCTACAGTCCATGGGGTTGCAACGAGTCAGACACGACTGAGTGAATAACATGCTGGGGGAGCCCTAGAACTCCTGAGTTCCAGAACACCAGAACTGAAGGGTCCTCGGAGTTCTAACTCCCTTATTTGACATCCAGAGAAGGGCAGTGACCCCTCCAGGGTTGCACAGTAAGTCAGAGATGGTCTGGACCCAGCACAGGGCTCCGGTGAAGGGGGGATCTAATGGAGATTACCCCATCTCCACCACACTGTCTGAAACGGAAGCCCCTGCTCCGTCTTGTTTCCTAACAGCCCAAAGCTTAGGGAAGTTTGAAGTCTGGGGTTTCCCTGCAAAGAGCTCCTTACACTCATGAAACAGTCCAAGTGGCTGTCCCCAGTGCCACCTGCAGGCACACACTCGTTTTGATTCTCTTGACCTGGAGACCTGGCCTTGGACCACGGGAATTAGACTGTGGGAACAGGACACATGGTTGGTACTGAAACGTCACCAGACTCTTTCTCAGTCAGTCCAGCGGCCTCTTGTCCCCTGGAATAGTGGCTGGAATCACTGGGAAGAAGGGGGGCAGCTATTTGAGGGTCACACGATTGGTCAATATGTATGAGATCTTTTCTGACAGGGGGTTAGTGAGAAGGTTCCGACAGAAAAATCCCAGCATTGTATGGTGGGTGAGCACAGCTCAGACTTTAAGGTCCTCATCTGTCCGCCCATCACTGAGACATCCCTCCAGCCCTGCTTCGGACGTTCTTACCTTTTCTCTGGGTTTGGAAAGAAGGGTGGTGATAACAGCAGCGGTCTCTCCCAGTTGCTGTATCCTAATTCAGCTTACAAGCCCTGCCCCAGGAGGGATCAGTCCCGGCTGTCTTCTGGTCTAAGAACCACTGGTGATAGAGAGGAAACTGCAGGATGCCTGATGTACATATCTCCACTCGGACAGCAGTTCTCAAACGCGTACTAGCACACGTCCCTGCCATAGCGCCTGCAGTGCTGCGAAGGCAGGCGGGAAGGCCGCACCTCTGTGATCCCTGGACCCAGACGTGTGGTCCTGGGCTCAAGTGGTTTCTTTCCCTCCGCAG
Seq C2 exon
GGACAGAAGGGTTATCCTGGACCAACGGGGCACCCCGGAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019807:ENSBTAT00000001200:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(18.9=100),PF0139113=Collagen=PU(2.9=11.1)
A:
NA
C2:
PF0139113=Collagen=FE(15.6=100),PF0139113=Collagen=FE(20.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]