BtaINT0042813 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004664 | COQ4
Description
coenzyme Q4 [Source:HGNC Symbol;Acc:HGNC:19693]
Coordinates
chr11:98932996-98933720:+
Coord C1 exon
chr11:98932996-98933092
Coord A exon
chr11:98933093-98933617
Coord C2 exon
chr11:98933618-98933720
Length
525 bp
Sequences
Splice sites
5' ss Seq
GCAGTAGGT
5' ss Score
4.53
3' ss Seq
TCCTGCCTTCTGCTTCACAGGGA
3' ss Score
9.25
Exon sequences
Seq C1 exon
ACATGGTTGCAGTTCTGGGAGAGACCACAGGACGCCGTACCCTGAAGGTCCTCAGGGACCAGATGAAGAGGGATCCAGAGGGTGCCCAGATCCTGCA
Seq A exon
GTAGGTCCCAGCTCTGCCTGGGGGATTGAGGGCATTCTTTGGGGATTCTGATTTCTCTGGAATCACATGGTGTTCCTCTAGGGAACTCTTCTTGATACCATGGCCATGGATGGTTGCACAGGCTGGGCACTGCCCAACTCCATGGATGTCATTCACATAGACAACTCTGATGACCTCTGGACAGTGCAGTATGGTGGCCTCAGCCCTGTTCCAACAACAGGGCTCTTGTGCGTTCACTAATGTCCCGTAGCATATGCTGCCTGTAACCCGCACCCCTGCAGTGCCCTGTGTGAATACCCAGATCACGTCTGAGGCCTATTTACCTAAGGCAGGAACCACAGCCTTAGCTTGTGGTAGTCTCTTCAGTCCCTGCCACTGGCCTGGCCAGTAGTAGAGGCTGCATTAGGACTTGACCCCGTTGCTGCCCTCTGCCCCTTCACCTCTCACACCCTTAATCTAGCTGGACCTTTCACCTGCCTTTGCTGCTGCCTTCCCAGTATCTGAGTCCTGCCTTCTGCTTCACAG
Seq C2 exon
GGAGCGTCCCCGGATCTCGCTGTCCACCCTCGACATGGGCAAGCTCCGGAGTCTGCCCGAGGGCTCCTTTGGCCGCGCGTATCTCCATTTCCTGGATGTGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004664:ENSBTAT00000006120:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF050198=Coq4=FE(30.5=100)
A:
NA
C2:
PF050198=Coq4=PU(14.9=95.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGGTTGCAGTTCTGGGAG
R:
CAGGAAATGGAGATACGCGCG
Band lengths:
191-716
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development