HsaINT0040190 @ hg38
Intron Retention
Gene
ENSG00000167113 | COQ4
Description
coenzyme Q4 [Source:HGNC Symbol;Acc:HGNC:19693]
Coordinates
chr9:128325143-128325881:+
Coord C1 exon
chr9:128325143-128325239
Coord A exon
chr9:128325240-128325778
Coord C2 exon
chr9:128325779-128325881
Length
539 bp
Sequences
Splice sites
5' ss Seq
GCAGTAGGT
5' ss Score
4.53
3' ss Seq
GCCCAAGTCTTGCCTTTCAGGGA
3' ss Score
7.03
Exon sequences
Seq C1 exon
ACATGGTCGCAGTTCTAGGGGAGACCACAGGACACCGCACCCTGAAGGTCCTCAGGGACCAGATGAGGAGGGATCCAGAGGGTGCCCAGATCCTGCA
Seq A exon
GTAGGTCCCAGCTCTGCCTGGGGGTCTGGGGGCATTCTCTAGGTATTCTGACCTCTCTAGAATCACATTGTGTTTGTTCTGTTCCGCTAGGGAGCTTTTGATACCCTGGCTACATATGGTTGCACAGGCTGGGCACTGCCCAATTCCAGGGGTGTCATTCACATACATGTGTATACACTGATGACTTCCGAGTTGTGCAGTGTGATAGCCTTGGCCCAGTTTCAACCACAGGGCTCTGTGCCTTCATTAAGTTCCCATAACATGTGCTGGCTTTACCCCTCCCTTGCAGTACCTTTTGCAAGTACTCTGGTCACATTCGAGGACTGTCTTCCTGCCGAGATTGTACCCCTGCCCATGTCCTTGGTTTGGGGTAGTATCCTAAGTCCCTGACACTAGCCTGGCCAGTTGTAGGTGCTCCATTAAGGCTTGTGGTGGCCACATTGCTCCTCTGTACATTCTCCCGCCCCTCAGCTCGCTGTAGTTGGATCGTTCACCTACCTTTGCCCACACCCTCCCAATGCCCAAGTCTTGCCTTTCAG
Seq C2 exon
GGAGCGTCCCCGGATTTCGACATCCACCCTCGACCTGGGCAAGCTCCAGAGCCTGCCGGAAGGCTCCCTCGGTCGCGAGTATCTCCGTTTCCTGGATGTGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167113:ENST00000300452:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.424 A=NA C2=0.127
Domain overlap (PFAM):
C1:
PF050198=Coq4=FE(14.4=100)
A:
NA
C2:
PF050198=Coq4=PD(37.0=69.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTCGCAGTTCTAGGGGAG
R:
GTTCACATCCAGGAAACGGAGA
Band lengths:
198-737
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development