HsaEX0016826 @ hg38
Exon Skipping
Gene
ENSG00000167113 | COQ4
Description
coenzyme Q4 [Source:HGNC Symbol;Acc:HGNC:19693]
Coordinates
chr9:128323016-128325881:+
Coord C1 exon
chr9:128323016-128323147
Coord A exon
chr9:128325143-128325239
Coord C2 exon
chr9:128325779-128325881
Length
97 bp
Sequences
Splice sites
3' ss Seq
GCCCGTTTCTGTCCTTTCAGACA
3' ss Score
9.85
5' ss Seq
GCAGTAGGT
5' ss Score
4.53
Exon sequences
Seq C1 exon
AAATGCCCCTCCGGGCTAGGAGCGACGGCGCCGGCCCGCTATACTCGCACCACCTCCCCACCTCCCCGCTGCAGAAAGGGCTGTTGGCCGCCGGCTCCGCGGCGATGGCGCTCTATAACCCCTACCGCCACG
Seq A exon
ACATGGTCGCAGTTCTAGGGGAGACCACAGGACACCGCACCCTGAAGGTCCTCAGGGACCAGATGAGGAGGGATCCAGAGGGTGCCCAGATCCTGCA
Seq C2 exon
GGAGCGTCCCCGGATTTCGACATCCACCCTCGACCTGGGCAAGCTCCAGAGCCTGCCGGAAGGCTCCCTCGGTCGCGAGTATCTCCGTTTCCTGGATGTGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167113_MULTIEX1-1/4=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.335 A=0.424 C2=0.127
Domain overlap (PFAM):
C1:
PF050198=Coq4=PU(13.5=66.7)
A:
PF050198=Coq4=FE(14.4=100)
C2:
PF050198=Coq4=PD(37.0=69.8)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACTCGCACCACCTCCCC
R:
GAAACGGAGATACTCGCGACC
Band lengths:
183-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development