DreEX6013454 @ danRer10
Exon Skipping
Gene
ENSDARG00000104733 | coq4
Description
coenzyme Q4 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060526-218]
Coordinates
chr5:53773854-53776393:-
Coord C1 exon
chr5:53776271-53776393
Coord A exon
chr5:53775797-53775893
Coord C2 exon
chr5:53773854-53773986
Length
97 bp
Sequences
Splice sites
3' ss Seq
ATATTATTGTGTTAAAACAGATA
3' ss Score
5.79
5' ss Seq
TCTGTATGT
5' ss Score
3.86
Exon sequences
Seq C1 exon
TACTCACCGAAGAGAAGTATGATGGAAGATTGTATCCAAGCCACATTCCAACAAGCACTGTTCAGAAGGCTATTTTGGCTGTAGGTTCCGGAGTTGCTGCCCTTAAAAACCCCTATAGACATG
Seq A exon
ATATGGTTGCAGTGCTTGGAGAAACCACAGGGCACCAGACCCTAATAAAGTTGAGAGATCGGATGAGAAATGACCCTGAAGGTTCTACTATTCTTCT
Seq C2 exon
CTATATTTATTTCTGGTATTTTGCCTCTAGAGAGCGCCCAAGGATCCGCCTATCTACATTAGACCTTTCTAATATGTCTGCCTTGCCAGATGGGACTTTAGGAAGAGAATATCTACGTTTCCTTGAGGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104733-'3-3,'3-2,5-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
PF050198=Coq4=PU(13.5=71.4)
A:
PF050198=Coq4=FE(14.4=100)
C2:
PF050198=Coq4=FE(15.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCACATTCCAACAAGCACT
R:
CCATCTGGCAAGGCAGACATA
Band lengths:
178-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]