MmuEX6100095 @ mm10
Exon Skipping
Gene
ENSMUSG00000026798 | Coq4
Description
coenzyme Q4 [Source:MGI Symbol;Acc:MGI:1098826]
Coordinates
chr2:29788437-29790530:+
Coord C1 exon
chr2:29788437-29788568
Coord A exon
chr2:29789903-29789999
Coord C2 exon
chr2:29790457-29790530
Length
97 bp
Sequences
Splice sites
3' ss Seq
TCCCATCTCTGTCCTTTCAGACA
3' ss Score
10.87
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
Exon sequences
Seq C1 exon
ATGTACCCCTCAGGGCCGGGAGCCATGGCGCCCGCCTGCTGTACCCGGACCACATCCCAACCACCCCGCTGCAAAAGATGCTGCTGGCTGCGGGCGCGGCGGGAATGGCTCTCTACAACCCCTATCGCCACG
Seq A exon
ACATGGTTGCAGTTCTAGGGGAGACCACAGGATGCCACACCCTGAAATTCCTCAGGGACCAGATGAAGAAGGATCCAGAGGGTGCCCAGATTCTACA
Seq C2 exon
AGAGCGTCCCAGGATCTCCCTGTCTACCCTCGACCTGAGCAAGCTTCAGAGCCTGCCTGAAGGCTCACTGGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026798-'1-3,'1-1,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=0.273 C2=0.212
Domain overlap (PFAM):
C1:
PF050198=Coq4=PU(13.5=66.7)
A:
PF050198=Coq4=FE(14.4=100)
C2:
PF050198=Coq4=FE(15.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGTACCCGGACCACATC
R:
GGCCCAGTGAGCCTTCAGG
Band lengths:
171-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types