BtaEX6046395 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004664 | COQ4
Description
coenzyme Q4 [Source:HGNC Symbol;Acc:HGNC:19693]
Coordinates
chr11:98931549-98933720:+
Coord C1 exon
chr11:98931549-98931680
Coord A exon
chr11:98932996-98933092
Coord C2 exon
chr11:98933618-98933720
Length
97 bp
Sequences
Splice sites
3' ss Seq
CCCATTTTTTTTCCTTTCAGACA
3' ss Score
10.81
5' ss Seq
GCAGTAGGT
5' ss Score
4.53
Exon sequences
Seq C1 exon
GTGTTCCCTTCAGAGCCGTGAGCCATGGCACCGGCCTGCTCTACCCCGAACACATCCCCACCTCCGTGCTGCAGAAGGTGCTGCTGGCCGCCGGCTCTGCCGGGATGGCGCTGTACGATCCCTATCGCCACG
Seq A exon
ACATGGTTGCAGTTCTGGGAGAGACCACAGGACGCCGTACCCTGAAGGTCCTCAGGGACCAGATGAAGAGGGATCCAGAGGGTGCCCAGATCCTGCA
Seq C2 exon
GGAGCGTCCCCGGATCTCGCTGTCCACCCTCGACATGGGCAAGCTCCGGAGTCTGCCCGAGGGCTCCTTTGGCCGCGCGTATCTCCATTTCCTGGATGTGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004664-'2-2,'2-1,4-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.364 C2=0.000
Domain overlap (PFAM):
C1:
PF050198=Coq4=PU(28.6=66.7)
A:
PF050198=Coq4=FE(30.5=100)
C2:
PF050198=Coq4=PU(14.9=95.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACACATCCCCACCTCCGT
R:
CAGGAAATGGAGATACGCGCG
Band lengths:
179-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]