GgaEX1017223 @ galGal4
Exon Skipping
Gene
ENSGALG00000004927 | COQ4
Description
coenzyme Q4 [Source:HGNC Symbol;Acc:HGNC:19693]
Coordinates
chr17:4985304-4987384:-
Coord C1 exon
chr17:4987205-4987384
Coord A exon
chr17:4986571-4986667
Coord C2 exon
chr17:4985304-4985406
Length
97 bp
Sequences
Splice sites
3' ss Seq
CTGTGCGGCCTCTCTTTCAGACA
3' ss Score
9.97
5' ss Seq
CCAGTGCGT
5' ss Score
5.65
Exon sequences
Seq C1 exon
GCAGAGCCGGGTTGGGCCGCGCCGTGCCCCGCGCTGAGGAGGAGGAGGAGGAGGAGGAAGAGCGGCAGCGGGGGGGGCGCGTCCCGCTGTACCCCGGGCACATCCCCACCACCCCGCTGCAGAAAGCGCTGCTGGCGGCCGGCTCGGCGTGCGCGGCGCTGTGGGACCCCTACAGGCACG
Seq A exon
ACATGGTGGCGGTCCTCGGCGAGACCACGGGCTGCCTTGCCCTGCCCAAGCTGCGAGACAGGATGAGGAATGACCCCGAAGGTTACCGCATCCTCCA
Seq C2 exon
GGAGCGGCCTCGCATCCGCCTCTCCACGCTGGACATGGCCCGGCTGGGGGGGCTGCCAGATGGCACCCTGGGCCGTGAGTACATCCGCTTCCTGGAGGACAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004927_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.492 A=0.152 C2=0.000
Domain overlap (PFAM):
C1:
PF050198=Coq4=PU(13.6=49.2)
A:
PF050198=Coq4=FE(14.5=100)
C2:
PF050198=Coq4=FE(15.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCCCGCTGCAGAAAG
R:
TCCTCCAGGAAGCGGATGTAC
Band lengths:
171-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]