RnoEX0023793 @ rn6
Exon Skipping
Gene
ENSRNOG00000026691 | Coq4
Description
coenzyme Q4 [Source:RGD Symbol;Acc:1304638]
Coordinates
chr3:8349542-8351423:+
Coord C1 exon
chr3:8349542-8349673
Coord A exon
chr3:8350739-8350835
Coord C2 exon
chr3:8351321-8351423
Length
97 bp
Sequences
Splice sites
3' ss Seq
GCCCATCTTTGTCCTTTTAGACA
3' ss Score
9.35
5' ss Seq
GCAGTAGGT
5' ss Score
4.53
Exon sequences
Seq C1 exon
ATGTGCTCCTCAGGGCCGCGAGCCATGGCGCCCGCCTGCTGTACCCAGACCACATCCCTACTACGCCGCTGCAGAAGATGCTGCTGGCCGCCGGCGCGGCGGGAATGGCGCTCTACAATCCCTATCGCCACG
Seq A exon
ACATGGTTGCAGTTCTAGGGGAGACCACAGGATGCCACACCCTGAAATTCCTCAGGGACCAGATGAAGAAGGATCCAGAGGGTGCCCAGATTCTGCA
Seq C2 exon
AGAGCGTCCCCGAATCTCACTGTCTACCCTCGATCTAAGTAAGCTCCAGAGCCTGCCTGAAGGCTCTCTGGGCCGTGAGTATCTGCGCTTCCTGAATGCGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026691-'2-3,'2-2,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.182 C2=0.000
Domain overlap (PFAM):
C1:
PF050198=Coq4=PU(13.5=66.7)
A:
PF050198=Coq4=FE(14.4=100)
C2:
PF050198=Coq4=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCACATCCCTACTACGCC
R:
CAGATACTCACGGCCCAGAGA
Band lengths:
171-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]