GgaEX1017223 @ galGal3
Exon Skipping
Gene
ENSGALG00000004927 | COQ4
Description
NA
Coordinates
chr17:5616672-5618768:-
Coord C1 exon
chr17:5618573-5618768
Coord A exon
chr17:5617939-5618035
Coord C2 exon
chr17:5616672-5616774
Length
97 bp
Sequences
Splice sites
3' ss Seq
CTGTGCGGCCTCTCTTTCAGACA
3' ss Score
9.97
5' ss Seq
CCAGTGCGT
5' ss Score
5.65
Exon sequences
Seq C1 exon
CCGCCTCTCCCCGCAGGCAGAGCCGGGTTGGGCCGCGCCGTGCCCCGCGCTGAGGAGGAGGAGGAGGAGGAGGAAGAGCGGCAGCGGGGGGGGCGCGTCCCGCTGTACCCCGGGCACATCCCCACCACCCCGCTGCAGAAAGCGCTGCTGGCGGCCGGCTCGGCGTGCGCGGCGCTGTGGGACCCCTACAGGCACG
Seq A exon
ACATGGTGGCGGTCCTCGGCGAGACCACGGGCTGCCTTGCCCTGCCCAAGCTGCGAGACAGGATGAGGAATGACCCCGAAGGTTACCGCATCCTCCA
Seq C2 exon
GGAGCGGCCTCGCATCCGCCTCTCCACGCTGGACATGGCCCGGCTGGGGGGGCTGCCAGATGGCACCCTGGGCCGTGAGTACATCCGCTTCCTGGAGGACAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004927-'1-4,'1-1,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.591 A=0.182 C2=0.000
Domain overlap (PFAM):
C1:
PF050198=Coq4=PU(13.5=45.5)
A:
PF050198=Coq4=FE(14.4=100)
C2:
PF050198=Coq4=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCCCGCTGCAGAAAG
R:
TCCTCCAGGAAGCGGATGTAC
Band lengths:
171-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]