MmuINT0041074 @ mm9
Intron Retention
Gene
ENSMUSG00000026798 | Coq4
Description
coenzyme Q4 homolog (yeast) [Source:MGI Symbol;Acc:MGI:1098826]
Coordinates
chr2:29645423-29646079:+
Coord C1 exon
chr2:29645423-29645519
Coord A exon
chr2:29645520-29645976
Coord C2 exon
chr2:29645977-29646079
Length
457 bp
Sequences
Splice sites
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
3' ss Seq
TTCTATATTCTGTCTTTCAGAGA
3' ss Score
10.32
Exon sequences
Seq C1 exon
ACATGGTTGCAGTTCTAGGGGAGACCACAGGATGCCACACCCTGAAATTCCTCAGGGACCAGATGAAGAAGGATCCAGAGGGTGCCCAGATTCTACA
Seq A exon
GTAGGTCCCAACTTTGCTTTTGGCAGGGGTGTGTCTGTCCTCATCCTGTTAGGAGCCCTTCAGAGGACCATGGGTGGATATATTGCCTGGGACACTGCTCAAAGCCAGGAGCACGCATATATGTATGTGGGATTATACAATATGTCATCTTAGTCCTGTGTAAACCACAAGACTCTGCTTGCATTAAGCTGGCTGTACTTCTCCAGCTGTGCTGTATCTATCCCTTCCCTGGCATCTGTGGCCCTTCTCTCTGACTAGATTGTGTCTTTGAAGGCACCAGCTCAGCCCTGGGTTGGGATCGTCTCCATAGTCCCTAATACTGCAGTGTTCTCTTAGGGCTTGTGGCTACATAGATGTCCTGTGGCTACCTAGGCCCACTTCAGCTTCCTTTATGTGACCCTTTCACTTGCCTTGGCTGACACACACCCAGGCTTACCTTCTATATTCTGTCTTTCAG
Seq C2 exon
AGAGCGTCCCAGGATCTCCCTGTCTACCCTCGACCTGAGCAAGCTTCAGAGCCTGCCTGAAGGCTCACTGGGCCGTGAGTATCTTCGCTTCCTGGATGTGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026798-Coq4:NM_178693:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF050198=Coq4=FE(14.4=100)
A:
NA
C2:
PF050198=Coq4=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGGTTGCAGTTCTAGGGG
R:
TTCACATCCAGGAAGCGAAGA
Band lengths:
199-656
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: