RnoINT0040868 @ rn6
Intron Retention
Gene
ENSRNOG00000026691 | Coq4
Description
coenzyme Q4 [Source:RGD Symbol;Acc:1304638]
Coordinates
chr3:8350739-8351423:+
Coord C1 exon
chr3:8350739-8350835
Coord A exon
chr3:8350836-8351320
Coord C2 exon
chr3:8351321-8351423
Length
485 bp
Sequences
Splice sites
5' ss Seq
GCAGTAGGT
5' ss Score
4.53
3' ss Seq
TCCTACATTCTATCTTTCAGAGA
3' ss Score
9.5
Exon sequences
Seq C1 exon
ACATGGTTGCAGTTCTAGGGGAGACCACAGGATGCCACACCCTGAAATTCCTCAGGGACCAGATGAAGAAGGATCCAGAGGGTGCCCAGATTCTGCA
Seq A exon
GTAGGTCCCAGCTTTGCCTTGGCATTTGGCGGGGGTGTGTCAGTTTTCATCCTGGAAGGAGCCCTTCAGAGGACCATGGATGGATGCATTGCCTAGGGCACTGCTCAAAGCCAGGAGCACACGTATGTGTGTGGGGGATGAATCCCATGGGTTGTACAATATGTTGTCTTAGTCCAGTGTCAGCCACAAGACTCTGCCTGCATTAAGCTCTCAATGGCAAGCAGTACTTCTCCAAATGTCCTCTATCCCCTCCCCTGACGTCTGTGGCCCCTCTTCTCTGACTGAATTGTGCCTTTGATGGCACCAGCTCAGACCTGGGTTGGGATTGTCTCCACAGTCCCTAATATCGCCGTGCTCCATTAGGGATTGTGGCTACTACATAGGTGTCCTGTAGCTCTGTACTCACTTCAGCTTCCGTTATGTGACCCTTTCACTTGCCTTGGCTGGCACACACCCAGTCCTACCTCCTACATTCTATCTTTCAG
Seq C2 exon
AGAGCGTCCCCGAATCTCACTGTCTACCCTCGATCTAAGTAAGCTCCAGAGCCTGCCTGAAGGCTCTCTGGGCCGTGAGTATCTGCGCTTCCTGAATGCGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026691:ENSRNOT00000038602:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF050198=Coq4=FE(14.4=100)
A:
NA
C2:
PF050198=Coq4=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGGTTGCAGTTCTAGGGG
R:
ATTCGCATTCAGGAAGCGCAG
Band lengths:
200-685
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]