GgaINT0124426 @ galGal3
Intron Retention
Gene
ENSGALG00000004927 | COQ4
Description
NA
Coordinates
chr17:5616672-5618035:-
Coord C1 exon
chr17:5617939-5618035
Coord A exon
chr17:5616775-5617938
Coord C2 exon
chr17:5616672-5616774
Length
1164 bp
Sequences
Splice sites
5' ss Seq
CCAGTGCGT
5' ss Score
5.65
3' ss Seq
GCTTTCTGTTTCCCTTTCAGGGA
3' ss Score
13.22
Exon sequences
Seq C1 exon
ACATGGTGGCGGTCCTCGGCGAGACCACGGGCTGCCTTGCCCTGCCCAAGCTGCGAGACAGGATGAGGAATGACCCCGAAGGTTACCGCATCCTCCA
Seq A exon
GTGCGTCCCCCACACCCGGCCCTGCACCTCTTTCCCTCCGTCAGACCCCATCCCTCCACCCCGTGGGTCCGAGCGTGTTCCCTGGGCCCTCCTGCAAAGGAGAGCCCCGCACTGCTGCCCTGTGAGGAGCTCAGGCGTTTGTCAGCTCTGAGCCTCCCGGCTGTGCACTTTGCTCTGTACTCAGAGCTGAGCAGAGCCGTGCAGCAGGTCTGGGAGCAGCAGCACGGAGCCCCTGGGCTGTTTCAGCATCGCAGTCTGTTCTGCTCTGCTGCCACTGGCAGGTGCTGTGTCTCTGTGTGTGGATGCAGAGTGTTTTGTCCTCTGCAGCGTCTCCTCGGTTGGGGACTCCACCCCCACTGCTTTGTTTTCTCCATAGGCACCTCCACGCTTTCATTCCACCACCCACTGCATCTCCCTAAGCTGTGAGATAAGACTTGATGGCTTTTGCTTCTGCATCTGCAGGGACTCATTGGGCACAAGTCTGAGGACCAGCAGGGACTCAATAAGGCTCCAATTGACCACAGTCTCACTGCTCCTTTGTCTTTTTATTTTTTTTTCCCAGTCCCTCAGGCTGATGAGGGATACAAGGAAGTGTCTGCTGCAGCCAGGGCAGAGCTGCTGCTCATCCCGCTTATCTCCCTGGCACCTGGGCAGCTCCTGGATCCACTGCAGGCTTTTATCAGGAGGAGAATTTGTCCCGCGAGGAAATGAAAGGACTTTTGTTCTGTCCCAGTGCTGTACGGTGCCTGTTTGCCACCAGCCTGGGCAGGAGACCTTTCTGTGCATGGCCTCCACGTGGCTGCCGATGAAAGCCTGAGCAGGAGAGATGCAAAACCTGCATCAGAACAAACTCCTTCCCCTCTCTCAGGGCTGCTGCTTTGAAGCCTGTCTTTCACAGGGGCACTGAGATCCGCTCCCCAGGCCTGGCTGCCAGCCAGGCTCAGTGCAAGCACTGCACTTCTCCTCCCGGAGCTGCCGGAGTGGGGAGAGGTGGGAATTCTCATAGCCGGGCCTTCAGGTGGATGCCTTAAAGAACGCATCCTGGTGGGAGCGCTTAGGGGCTGTGCCGGGAAGGGCAGGGAGGGGTTTCCAGGGCTCCATCTGCCCAGCACCCCCCGTGTGTGGGTCTCACACGATGCTCAGTGCTTTCTGTTTCCCTTTCAG
Seq C2 exon
GGAGCGGCCTCGCATCCGCCTCTCCACGCTGGACATGGCCCGGCTGGGGGGGCTGCCAGATGGCACCCTGGGCCGTGAGTACATCCGCTTCCTGGAGGACAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004927:ENSGALT00000007881:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF050198=Coq4=FE(14.4=100)
A:
NA
C2:
PF050198=Coq4=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGGTGGCGGTCCTCG
R:
CAGGAAGCGGATGTACTCACG
Band lengths:
191-1355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]