BtaINT0043808 @ bosTau6
Intron Retention
Gene
ENSBTAG00000026403 | CREBBP
Description
Bos taurus CREB binding protein (CREBBP), mRNA. [Source:RefSeq mRNA;Acc:NM_001164022]
Coordinates
chr25:3054722-3056586:-
Coord C1 exon
chr25:3056419-3056586
Coord A exon
chr25:3054884-3056418
Coord C2 exon
chr25:3054722-3054883
Length
1535 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACA
5' ss Score
8.1
3' ss Seq
AGCCATGCGTCTTGTTGCAGGGC
3' ss Score
6.64
Exon sequences
Seq C1 exon
GACATTTTGAAACAAGCAAATGAAGACAGGCTCACCAGCGCCAAGGAGCTGCCCTACTTTGAGGGGGACTTCTGGCCTAACGTGCTGGAGGAGAGCATTAAGGAGCTGGAGCAGGAGGAGGAAGAGAGGAAGAAGGAGGAGAGCACCGCGGCCAGCGAGACCACAGAG
Seq A exon
GTAACACCGGCCGCGCGCTGAGGCTGCGCTTCAGCGGCCAGGTCCTCAGCAGGGGGCCAGCCTCGTCCACGGTGGTGTTTCCGCACAGCCTCACCGCGTGATCACCCACCGCGGGGCCGGCCTGGGCCTGGACCTGGGCCGCAGCCCAGCCACGGTTCCCAGCTCCACGGAGACGCATGACCTCCTAGGTGGACGGGGGGCCTCGCTCTGGCTTCTCTGGGCAGGATGCCCAGGTCTGAAACCTGGAAAGATGAGAGGAGAGCATCCTGCAGGGAGCCCGGGAGAGATGGGCAGAGGTGCAGACGGGAGTTGTGGTCAGGAAGCAGTCCGTTCACTTTAACACTGACTTGAGGAGGAGGCTCATATTTGCAGGCCTCATGCACTTGCTCTGTTATAGACTGCACCCTGCTCTCCACTGGGCACTTGTGTGTTTGTGCCCTTACTCGGGTCACTCTAAGCCCCCGCTGTGTACAGGCCCCATCCTGAGGACTACAGTGGGAACTAGTGAGAGAAGCAGGAGAACAGGCGCATGCGTAGTGCACCCTGAGGTGGTGGAGGAGACACAGGGAAGGTGGATGCGGGCTTTCAGGGAGCCTCATCTGGGGAGGTGGTACATGAGCAGAGACTGTCTAGGGAGAGGAGCCCAAGAGATCCAGGTGAAGGGCCTCCAGCAGGGGGAGGAAGGTGTCAGAGTCTGAGCCGATGTGTCGTGTTTGAGATGCTCAAGTAAGAGCTGATGGTGGTTTAGTTGGACGCGAAGCCGTCAGCAGTGAGAAGCGTAGGATGTTTTTCAAGACTAACAACCCTAAATTTAGGGCGTGTAAGGACAGTTCTGTTTGAAGGCCGCCTGCTAGGTCTGGGCCTCAGAGTCGGTGTTGCAGCCTCTCTGAGGGGAGGTGGACAGGGAGCACCGCTGGGGGACGACCATGAACTGGCTGTGGACCCACTCATCTCGAGAGGCTGCTGGTTGCTGACTGCGCAGCTCTGGGACTCTGGGGGGCCTAGGGCAGCTTGAGGAGCTGCATCTGGAGCCCTGGGCTGGGGGTTCATGTCTGCAGGCTGCTTCTGCCGCCTTGGGTGCTTTAGGGCGTGTCCTCTTTGGAACACAGCCACCCCAGCCCCTTCCAGAATGGAGAATGCCTGGGTGAGGATGTGATGAGCTCTCATGTCACAGGTGGGCCCCAAGGGGCTGTGTTCATTGTCCTTGGCATGCCAAAATTTTGCCGGGCCTCCCTGGAGGCAGAACCTGTGGGCCTGGAAGATCGGGTGATTTAGGGCTGGAGGTGCTGGGAGGCTGCACTGGTCAGCACCATGCCCACTGGGTCCACATCCAGCCACATCACCTTCCTCTCAGCACTTAGCTCTGAAGGCAGCAGTGTTCGTGGCCTGTGAGCAGGCAGGTTGCAGTCCGCTTGGTGGTCACCTGCCTCACCCTGGCTCCCTGGAGCCCCCATGACCAGGAGCTGGCGGCCTGGTGCCTACTGAGCATGGTGCAAGGGGCAGGGTGGGGCCGACAGCCATGCGTCTTGTTGCAG
Seq C2 exon
GGCAGCCAGGGCGACAGCAAGAACGCCAAGAAAAAGAACAATAAGAAAACCAACAAGAATAAAAGCAGCATCAGCCGCACCAACAAGAAGAAGCCCAGCATGCCCAACGTGTCCAACGACCTGTCCCAGAAACTCTACGCCACCATGGAGAAGCACAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026403:ENSBTAT00000005092:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.393 A=NA C2=0.833
Domain overlap (PFAM):
C1:
PF082146=KAT11=FE(17.9=100)
A:
NA
C2:
PF082146=KAT11=FE(17.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTTTGAAACAAGCAAATGAAGAC
R:
TTTGTGCTTCTCCATGGTGGC
Band lengths:
326-1861
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]