MmuINT0042151 @ mm9
Intron Retention
Gene
ENSMUSG00000022521 | Crebbp
Description
CREB binding protein [Source:MGI Symbol;Acc:MGI:1098280]
Coordinates
chr16:4088244-4091959:-
Coord C1 exon
chr16:4091792-4091959
Coord A exon
chr16:4088406-4091791
Coord C2 exon
chr16:4088244-4088405
Length
3386 bp
Sequences
Splice sites
5' ss Seq
GAGGTATAG
5' ss Score
7.13
3' ss Seq
AGCTTTCCATGTGGTTGCAGGGC
3' ss Score
6.72
Exon sequences
Seq C1 exon
GACATCTTCAAACAAGCGAACGAAGACAGGCTCACGAGTGCCAAGGAGTTGCCCTATTTTGAAGGAGATTTCTGGCCTAATGTGTTGGAAGAAAGCATTAAGGAACTAGAACAAGAAGAAGAAGAAAGGAAAAAAGAAGAGAGTACTGCAGCGAGTGAGACTCCTGAG
Seq A exon
GTATAGCCCCCTACTAGAGCTGTGCCACCAGAGTGGCAGGCTGGAAGTATACGCTTGCTATACTATTTCTGTGGTGATGTTCTCATTCACATACATAGAATATCACCAACAATGATAAGCAGATGTGATGTCTCTATACAAGAGATACTTCCTAGGGGCCTAGTGGTTAGACCTGGAGAGTAGAGGAGAGAAGTAATGTCTTATTGGAGCCAGAAAAGTACATGGAGGAAGGTGGAATTTACTTGCAAGTGTTCTGAAAGTTACTGCAACTGATCTTCTGGCCTTGTGCTAAACCTTGTGGCAGCTCATTTTGTGTTGCCTTTTATCCCCCCTTTCTCAATTTGTTCACTGTTTGCTGTCCCTCTGTACCAGGGAGTACAGAGTGAACTAAACAAGGCTTATTCTGCTACAACAGGTATCTTACACTGGGAGGACTAGGAAGGGACTAGATAGCTGCCTAGTGTGTTTTCAGGTGATGGGCAACTCTAAGAAGAAAGGAGTTTAGGGTAAAGAAGACAGCAGGAGGTCTGGGGTGGCTTTTGAAACAGTGACATAGGGATTCCATGTGAGTTATGGGGAGTGGAGGAAGTGGGCTGTATTGAAGATCACAAGGCACTGTGTGAGCTGACCATAGTATGTAGTGGTTATGGTTGTAGATTCAGTAGGTGGGCACAGTTAATTCTGTGGAGGATGTTTAGCATATGAGAAGTCATGAATTAAGTAGTGTCTTATGTGAAGCTGGAACCTTCTTTGATAAGAGAGAAGCAAAGAGTGGGCTGCAATGATGCCTGCAGTGTCCCCAAAGGTTGTGATTGAGACTGGACTCCAGCAGTACTAGGAGAGCTGGCAGCATGTGGCAACACCTGAAGCATCAGGTCAGCATGCATACTCAGTGCACACATGATTGTTGAGTGGTAGCAACATGCCAAGCACTGGGCACACTGAGTTATGTCTTCAAAAAGACAGCTTTATCAGAGAAAACACAGGCTAGATGAAACAAGTTTGTGTCCCTGGTGCTTCCCAAGAGCTCTCAAACTGTCCCCATTTTCCAACTTCCTCCCACTGGTTGATCATCCTTTCACCTTCTCAGGAACTTGACTGGTCCTCACCAAAGTTTGGTTTCTTAGTCTACTGCAAACTGGTTCAGAAGGATGCTGGAGAAGAGGGGCCATGTTCAACCTGGCCTTAACAAGCAGGTCTCAGTGCCTGACACGGGGTGTACTGTAGTGGAGACCAAGTGACCAAGAACCATCCACTGACTAAACCATGCCTCAGAGCAAAAAGGTGGCCTGATCCAGAACAATTTGTCTGAGCTTATAAAGGACAGCAGTGGTGGCATCACTTGAGGAAGTGGAATGGGGGTCCAGCTTTTAGGAGTCACTGGTGCACAGCACAGCAGAACACAGGAACAGCCCTGCAACCAAGGGGGAAAGGACTCTGAGGGAATACAAAACAAGCAGAGCCATCCAGAGCGGCCTCTGGCTTGGTGTCAGTCCCTGTCCAGAGGACCTGCCTTGCGCCTAAGCTGGTGGTCACTGGGTACCCAAGGGCTTAGTATGTGCTAGGAAAAGTGCTGACAAGTCCATCTGCTGTTGTTTTTTGTGTGCAGTTAGGTGCTGAGGGCAAGGACTTGCCTTCCTCAAGGATATCTACGACCCTTTAGCGGGGTTAACTTTAAGTATGGCCAATGCTTTATAAGGGGATGCTACTTTGCCAGTACAAATCAGATTCTCTGGGGTAGGAAATGGAGTAGAGGAAGTAGGGGCAGAATGCTTAGTTAAAACATACTATTATGCATGTATAAAGTTCTCAAACAGGTAAAAAATAAGAAAATTTGGAATTTCAAGTTAGTAGAAGTAGAGGAATGTTTATGGTGGTATTAAGTAGGGAAGAGAGGACACCATGTACACCATATCATATATTCAACCGCAGTTTTAGGGAAGACTTGGGCACAAGTGCAGGAAAAACTCTACTGGAAAAATAACCAAAGTGCATTGCAGCGGATAATGAAAATAATTTTCTTCTCTTTGGGGGGAGGGGGGGTGCGGGGGGTGTCTCTATGTAGCTTCGGCTGGCCAGAGATCAGCTTGTTTCCTGAGTGCTAGGATTGATTGGTTTTCAAGACAGGGTTTCTCTGTATAGCCCCGGCTGTCCTGGAACTTACTCTGTTGACCAGGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGTCTCCTGAGTGCTGGGATTAAAGGTGTGTGCCACCACGCCCGGCCTGAGTGCTAGGATTAAAGGGATATTCCACTATCTCCACTCCATTGCTTTAGAACATTGATGGTGAAGCCAGATGTGGTGGCCTACACTTTTAGTTCCAGCACTTGGGAGATAGAAGCAGGCAGATGTTCTTCAATTCAAGACCAGCTTGATCTATCTACACAGTAAGTTACAGATATACTGAGACCCTGTCTCAAAAAATCCCAACTAAAATTTATTTGAGGCCCACCAAAATGGGTCTACTAAGAGTACCTGGGCCTAGGATCCCCATGGTAGAAGAGAACACGTCTCCCTAAAAAAATACTGTCTGACCTCTGTATGGGCGCTGTAGTACACTCACAAATACACACACATGCATGCACATTTTTATTTTAAATAATTTGACTCAAGAACCTGAGGCAGGAGCGTGATGAGTTTGAATCCTAGGTTATATAGCATCCATTAAAGAAATTATAGAACTGAGGGTGTACTGGGTGGTAGAGTTCAGTGGTAGAGCACATGCTTAGCGTGTATAAGTTTCTAGGTTTTACCCTAGTACTACAGGATAAAGAATATTTTTCGATCAGATTAGCTTTTCTATATTGTATTCTAAGTGCGTGACACTCAAGTTCTTTTCATAGTAGAATCATTGAAGTACTTGAATTAAGGAATGAGTGAGTCCCTTTTAGACCTCAGCTAAGTCTAATGAATGCAGTAACAACAGTAATGAAAGTAGTAACAACAGCTTGCAATACAAGCTTAGACATGCTCTCAGACAAGCATTATCCAAGTGTAGGTATTGAGTGGGAAAGATCCTCCTGGTGCTGCCTCCCATTTACACCTTCCCCATGTCTTCTGAAAATTTATATAAATGAGCAGGTTTTCTCAAGGCAAAGGACCAGGTCCTGAGCATGCAGGATGGAATACTCCTGCCAGTGGAATTATGGGGAGTGATAGAAAATTTCCTCTGTTGCTTAGATTGCAAATTAATGTCCTGGAGAAGTAACTGGACATACAGGTGCTGTGGCTAGGCTGGGAGGATTCCATTCTTAGCCCTCTGGAAATAGCATGTGGCCCAGGTGCATATGAGGTCTGTGGAACCCTATAGCCTAGGAAATGAGCGTTGGTCTGACAGCTTTCCATGTGGTTGCAG
Seq C2 exon
GGCAGTCAGGGTGACAGCAAAAATGCGAAGAAAAAGAACAACAAGAAGACCAACAAAAACAAAAGCAGCATTAGCCGCGCCAACAAGAAGAAGCCCAGCATGCCCAATGTTTCCAACGACCTGTCGCAGAAGCTGTATGCCACCATGGAGAAGCACAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022521-Crebbp:NM_001025432:28
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.393 A=NA C2=0.833
Domain overlap (PFAM):
C1:
PF082146=KAT11=FE(17.9=100)
A:
NA
C2:
PF082146=KAT11=FE(17.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: