RnoINT0041939 @ rn6
Intron Retention
Gene
ENSRNOG00000005330 | Crebbp
Description
CREB binding protein [Source:RGD Symbol;Acc:2401]
Coordinates
chr10:11711970-11714232:+
Coord C1 exon
chr10:11711970-11712137
Coord A exon
chr10:11712138-11714070
Coord C2 exon
chr10:11714071-11714232
Length
1933 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
AGCTTTATATGTGGTTGCAGGGC
3' ss Score
6.04
Exon sequences
Seq C1 exon
GACATCTTCAAACAAGCGAACGAAGACAGGCTCACGAGTGCCAAGGAGTTGCCCTATTTCGAAGGAGATTTCTGGCCTAATGTGTTGGAAGAAAGCATTAAGGAGCTAGAACAAGAAGAAGAAGAAAGGAAGAAAGAAGAGAGTACTGCAGCGAGTGAGACTCCTGAG
Seq A exon
GTACAGAGCTGTGCCACCATAGGCAGGCTGAACAGTATATGTTTGCTGTCTGTCTAATTATTTCTGTGGTGATGTCCTGGTTCACATACATAGAGTATCACCATGAATAATGATAAGCAGATATGCTGTCTCTATACAAGAGACACTTCCTATGGGGCTTAGTAAGACCTGGAGAGTAGTAGAGAGGAGAAGTGACATCTTATTGGAGCCAGAAAAGTGCATGGAACAAGGTGGACTTTAAGAGCTGTGGAAGTTACTGCACTGAACTGCAGGCCTTGCAGCAGCTCATTCTGTGTTGCCTCCCCCACTCCTCTGTGCTCAGCTTGCTCACTATTTGCTATCCCTGTGGAGTACAAAGGGAGTACAAAGTGAACTAAACACAACCTTATCCTGCTGCAGCAGGTGTCTTACACCGGGAGGAGTAGGAAGGGACGATAGCTAGCTTCATACTGTGTACTCAGGTGATGGGCAACTCTGAGAAGAAAGGAGCTTAAGGTAAAGAAGACAGCAGGAGGTCTGGGGGGGGTATTAACTAGGAGAGACAGGATACCGTATCATGTATTCAACCACAGCTTTGGGAAAGACTTGGGCACAAACACAGGTAAAACTCTACTGGAAAAGTAACCAAAGTGCTTTGCACCAGATGATCAAAAATAATTTCCTTCTCTTTTTTTCTTGTTTTGGTTTTTATTGTTGTTTTTTGTTATTCTGTATGTCAGATAGACAGATAGATGTCTCTCTATGTAGCTTTGACTGGCCTAAACTCAGAGATGGGTTTGTCTCCTGAGTGCTGGAATTAAAGGCATATCCTGCTATCCCTGCTCCATTGTTTAGAACATTGATGTGAAACCAGATGTGGTGGCCTCTGCTTCTAGTCCTAGCACGAGGGAGATAAAGGCAGGCAGATCTCCTTGAGTTCAAGATCAGCTCGATCTATCTACACAGTGAGTTAGAGAGCTCCATACTGAGACCCTGCCCCTCCCCCCAAAAGTCCCAAATAAAATTTATTTGAGGGCCAGCAAAATGGGTCTACTAAAAGTACCTGCTGCATGTGTTCCTCATGAGGCCCAGGTTCCTCATGAGAGAAGAGAATAGTCTCCCTAAAAAACTGCTCTCTCACCTCCATATAGGCATCATTGGCACACTCATAAATACACACATATGCATGCACATAAGTAAAGTCACTTTTATTTTAAATAATTTGGCTCAACCTGAGACAGGAGCATGATGAGTTTAAAACCTAGGTTGTATATATCCATTAAAGAAATTACATTGTGGAGCTGAGGGTATACTTTATAGTTCAGTGGTAGAGCACATGCTTAGCATGTGTAAAGGTTCTAGGTTTTACCCTAGTATTACAAGGTAAAGAATTTCTCTGATCAGATTAGCTTTTCTATATTGTATTCTAAATGGGTGACGGTCCAAGTTCTTTTCATAGTAGGATCATTGGAGTACTTGAATTAGGGAATGAGTGAGTCCCTTTTTGACCTCAGCTAAGTAGTAAAAGTAGTAGCAGTAGCTTGTAAGACAAGCTTACACATGTTCTACCCTAGTGGAGGTATTGAATAGGAAAGATCAGTTGGGTGTAGTTACTCTTTGGTGCTCCCATTTACACCATCCCATGTCTTCTGAAAATTCATATAAATGAGCAGGTTTTCCCAAAGCAAAGGACTGGGTACCGAACATGCAGGATGGAGCATAGCACTCCTGCCAGTGGAATCCTGGGAGTGGTAGAGAAACTCCTCTGTTGCTTAGATTGTGAATTAACATCCAGGAGAAGTAACCGGACATACAAGTGCCCTGGCCAGGCTGGGAGGATTTCATCCTTAGCCCTCTGGAGGTAGTAGCCTATGGCCCAGGTGCATATGAGGTCTGTGGAACCCCATAGCCGAGGAAATGGGTGTTAGTCTAATAGCTTTATATGTGGTTGCAG
Seq C2 exon
GGCAGTCAGGGTGACAGCAAGAATGCCAAGAAAAAGAACAACAAGAAGACCAACAAAAACAAAAGCAGCATTAGCCGCGCCAACAAGAAGAAGCCCAGCATGCCCAATGTTTCCAACGACCTGTCGCAGAAGCTGTATGCTACCATGGAGAAGCACAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005330:ENSRNOT00000007079:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.393 A=NA C2=0.833
Domain overlap (PFAM):
C1:
PF082146=KAT11=FE(17.9=100)
A:
NA
C2:
PF082146=KAT11=FE(17.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCTTCAAACAAGCGAACGA
R:
CTCCTTGTGCTTCTCCATGGT
Band lengths:
329-2262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]