HsaINT0041361 @ hg19
Intron Retention
Gene
ENSG00000005339 | CREBBP
Description
CREB binding protein [Source:HGNC Symbol;Acc:2348]
Coordinates
chr16:3781777-3786204:-
Coord C1 exon
chr16:3786037-3786204
Coord A exon
chr16:3781939-3786036
Coord C2 exon
chr16:3781777-3781938
Length
4098 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
AGCCTTGCGTGTTGTTGCAGGGC
3' ss Score
7.26
Exon sequences
Seq C1 exon
GATATTTTCAAACAAGCAACTGAAGACAGGCTCACCAGTGCCAAGGAACTGCCCTATTTTGAAGGTGATTTCTGGCCCAATGTGTTAGAAGAGAGCATTAAGGAACTAGAACAAGAAGAAGAGGAGAGGAAAAAGGAAGAGAGCACTGCAGCCAGTGAAACCACTGAG
Seq A exon
GTACAGACCCTTCTCTGAGCTCCATTGCCCACGTGTCCCGCTGGAGCTGCAGGGTGGCAGGCTGGGAGGCGCGTGTCGACTGTTAGGTCCTTCCTGTGGTGGTGTCTCCGTTCACACATGCACGTCGACACCACCTGCAGCACAGGGCGTTGGTGGGCAGCAGTGTGGGCTCTGCACTCTCTGCACAGTGGATGCTCTGGGGAGCTGGGGGTCCACTTAGACTCGGAGAGGGAAGAGAGGAAGACAGAAAATGGGACATGGGGCAGTCAGGACACAACCCGCTGATGTAAAAAGTGAGTCGAGGAGGCACAGGGTTGCCAGGCCTTATTCCGTGTTTGGTGGCCACTCTGCACATGATGCTCATGCCCTGCTGCCCTCTCTCCTTGGCGCTGCCCCTGAGTGCCAGGCAGTGCAGACTGAGCCAAACAAAACCCCATCCCTGGCCAGGCGCGGTGGCTCACACCTGTAACCCCGCACTTTGGGAGGCCGAGGCAGGCGGATCACAAGGTCAGGAAAGGGAGACCAGCCTGGCTAACACAGTGAAACCCCATCTCTACTAAAAATACAAAAATTTAGCCGGTTGTGGGAGGGGGCACCTGTAATCCCAGCTACGAGGGAGGTTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCTAGATTGCGCCGTTGCACTCCAGCCCAGGAGACAGTGCGAGACTCCGTTTCAGAACAAACAAAACCCCATCTCCGCCCCCAAGGGAGTGGCTGTGTCCTGGTAGGATGTGAAACAAAAAGAACCCAGACCCAAGCATGGTGTGCTCTGAGCGTGGCAGAGCTCTGAAGGGGAAGGAGCCTTGGGGAGGTGGCGTGTGGGCCAGACCCGCCCACCACAGGAAGGTGCTGGAAGAGGACCCGCCAGGCGGTGGGAGGAGGCGCGCTGTGTGCGGGTTTGTGCGGCTGTCTGGGGAAGAGATGATGGTGGCGTGGGTGTGGGCTGTAGCTGTAGGTGCAGGGAGAGCGATGACGAACGTTGAAGGCTGCAGCCCCAGAACTTGGGACAGGCGATTGTGACCAGTGAGGAAAAGCGGTGAATGGAGGTGGCTCTTGCGTGGGCTGCTGCCATGGGTGAGGCAGCCGGGAGCCGGCTGGGGACATACTGCCACTCTGGTGCCTGTCCCATATGAGAGCACGTCTGTGAGGTGGGTGCCGGATGGGCTGTAGGCGGAGCGTGGGGCCTGGGCCGCTTCCGCCACACACACTCGTGCTCACTGCACAGGTGGTTGAGAGGCAGCCACCTGCTGGACGGCGCCCCAGAGTGTCATTCGCAGGACAGAGGAGGCGCGGGCAGGGGGTGGCGTGGGTTTACGCCCTAGGTGGCTCCTAAGCAGAGCTCCTGGCCTGTTGTCTTCGGACTTGCTCCCGCTGGAGTGTAGCTGGTCTCACTGGTGTCTGGTGAGTTAATGCTTGAGTTCCATCTCCTAAGGGTGACACGGGAGGTTACCGCGTCCGAGACAGGCTTTGCGCAGCTGAGTTCCACCCCAGGAGGGGGCACCTGCCTGTGGCATGGCAGCAGTGGGGTTGTCCAGAAGACAGGCCTGATAGGGGCTCCTGCTGGGGCAGCCTTCCCTGTGCACCGGGGACATGCATGTGTTAGGAGGCGGGATGCTGAGGTGTCGGCATGTAGACCTGCTGTCCCTTGTGTGTTTGGTTCATGGACAACAATGGGCAGGGACATGCCTTCGTCAGCAACACCCCAGGAGCTCGCTCTGGGGGTCAGCCTTAGTGAGGGCTGGTGCGTGGGGTGGAGCACTGCTTTGCTATTAGCTCTGCTCTGCATCATGCTGTCAATTCTGGGAAATGGGGAAAGGCTCGCGATAGTGTCAGGTGGGGCGAGAAACGGAACCAGCTCCCTGTGTGCAGTCCCAGCTTCGTGAGGAATGTCGCAAACACGGAGACAAATGTGCCCAGGGAAAGCTCCAGAACACAGAACACTGCTGCTCGGGAAGACCAGAAAAACAAAACTTTTTAAAATTACTTGTCTATATTTTCTTAATTTCATGAACATATTTATTTTATAATTTTGTAAAAATAGACTTCCAGGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGAGAGGCCAAGGCAGGTGGATCACTTGAGGTCAGGAGTTTGAGACCAGCTTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCAGGTGTGGTGGCGCACGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCCGGGAGGCACAGATTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGGTGACAGAGCGAGACTCCATCTCAAAAAAAATAGGCTTCCTTTGTTTTAAGGCTGACACAAAAATTGAGCACAGAGTTCCAGTATATTGCAGCACGCAGTTTCTCCTGTTACTAATGTCTTACCTTAGTGTGGCACATTTGCTGCCACGGTGAGCCATTTGTTGATGTTGATGCATTATTGTTAAGTCTACACTTCGTTCCAATTTCCTCAGTTTTCCCCTGACGTCCCTTTTCTGTCTCTGAATCCTGCGGAGGACCCACGTGATATTTGGGCTCCTCGGGCTGCTTGTCGGTGGGGTGGGAATTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCCATCTCAGCTCACTGCAAGCTCCGCCTCCCGGGTTCACACCATTCTCCTGCCTCAGCCTCCCGAGTAGGTGGGACTGCAGGCACCCGCCACCACGCCTGGCTAATTTTTTGTGTTTTTAGTAGAGACGGAGTTTCACCGTGTTAGCCAGGTTGGTCTTGATTTCCTGACCTCGAGATCCGCCTGCCTTGGCCTTCCAAAGTGCTGGGATTACAGGTGTGAGCCACCCCGCCCGGCTGGATTGTTGAATTCTCTCTGGACTGACCCCTCTCTTTGAACACCAAGAGTCTCTCTCATCTTGTTAAAAATGAAACTCTCTGGCTGGGCACGGTGGCTCATGCCTGTAATCTCAGCACTTTGGGAGGCTCAGGCGGGCGGATCACCCGAGGTCCGGAGTTCAAGGCCAGCCTGACCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCAGCACCTATAATCTCAGCTACTAGGGAGGTTCAGGCAGGAGAATCGCTTGAACCTTGGAGGCAGAGGTTGCAGTGAGCCGAGATCGCGTTATTGCACTTCAGCTTGGGTGACAAGAGCGAGACTCTGTCTCAAAAAAAATGATAGGTAGCCGGGCATGGTGGCGGGTGCCTATAATCCCAGCTACCCAGGAGGCTGAGGCAGGAGAATCACTTGAACCCAAGATGACACCACTGCACTCCAGCCTGGCAACAAGAGCAAAACTCCGTCTCTCAAAAAAAATAAAGCTCTCTGTTAAAGTGTAAGTGAGTGGTAATCCTGCGTTCTTTCCAGAGGAGGAGCCTGTGGGCTGAGAGCAAGCCCACCTTCAGCCAGTCAGGCGCAGCACTGATGGCCCCAGCAGGGAGCCAGCCTGCTCTCCGTGGGCCTTGAGTGGACCCCGCAGGGGCCTCAGAGTCCCTGCTCTTGATGGGGCAGCTGCTTTTCCCATCAGCAGCTTTCCTGTCTCCTGGAAGCTCTCATGCTTTCTCGGGTGTGTAGAGCCTTCCTCAAGGCAGACAGCTGCTGACCACAGTTGTGACGTGGAATCTTCCGCATCTGGTTGTGGCACAGTGGAAACAGCCCCCACTGCCCTCATTTGTTAATTTCTGAACTCGCACTCTGGGTCTCTTTTCCCCTTTAGAGGCAGCGTGGCATAAAGCTGATAATGACACCAGCCTGGCCGAGGACAGGCCCTGCTCTGTCCCGAAGGCTGCAGCACCTACAGCCACCTGTAGCCGTTCACGTATGGGGTCTGCCTGGTGGTGACCTACTTTGGCCTGAGCTTCCTGATGCCCACGGCCTGGGAGCTGGGCGTCCGTGCCAAGTGTGGAGGGGCACTTGCCTGGTCTCACAGCCTTGCGTGTTGTTGCAG
Seq C2 exon
GGCAGTCAGGGCGACAGCAAGAATGCCAAGAAGAAGAACAACAAGAAAACCAACAAGAACAAAAGCAGCATCAGCCGCGCCAACAAGAAGAAGCCCAGCATGCCCAACGTGTCCAATGACCTGTCCCAGAAGCTGTATGCCACCATGGAGAAGCACAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005339-CREBBP:NM_004380:28
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.357 A=NA C2=0.833
Domain overlap (PFAM):
C1:
PF082146=KAT11=FE(17.9=100)
A:
NA
C2:
PF082146=KAT11=FE(17.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)