DreINT0051890 @ danRer10
Intron Retention
Gene
ENSDARG00000104609 | crebbpa
Description
CREB binding protein a [Source:ZFIN;Acc:ZDB-GENE-050208-439]
Coordinates
chr22:26923454-26923905:+
Coord C1 exon
chr22:26923454-26923621
Coord A exon
chr22:26923622-26923743
Coord C2 exon
chr22:26923744-26923905
Length
122 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAAT
5' ss Score
5.37
3' ss Seq
CCTTTCATCCTTTCTAACAGGGC
3' ss Score
10.69
Exon sequences
Seq C1 exon
GACATTTTCAAACAAGCCACAGAGGACCGTTTGACGAGTGCAAACGAGCTTCCATATTTTGAGGGGGATTTTTGGCCCAATGTATTGGAAGAGAGCATCAAGGAGTTAGAGCAAGAGGAAGAAGAAAGGAAAAAAGAAGAAAACACGGCAGCTTGTGAAACTCCGGAG
Seq A exon
GTGAATGAGAGAGGCCTTTTTGACATTTTCGGATACTTGATTTTGATAACCTCAAAATGTATTTACATCTCTTTCATAAACTCCAAACGTCCTTTATAGACCCCTTTCATCCTTTCTAACAG
Seq C2 exon
GGCACACCAGGAGACAGTAAAAATGCAAAGAAGAAGAACAACAAGAAAACGAATAAGAATAAAAGCAGCTTGAGCCGAGCTAATAAAAAGAAACCTGGGATGCCGAATGTAGCCAATGACCTTTCTCAGAAGCTCTACGCCACCATGGAGAAACACAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104609:ENSDART00000158756:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.393 A=NA C2=0.796
Domain overlap (PFAM):
C1:
PF082146=KAT11=FE(18.0=100)
A:
NA
C2:
PF082146=KAT11=FE(17.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACGAGTGCAAACGAGCTT
R:
ACATTCGGCATCCCAGGTTTC
Band lengths:
248-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]