BtaINT0044590 @ bosTau6
Intron Retention
Gene
ENSBTAG00000038281 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr14:54240898-54248957:+
Coord C1 exon
chr14:54240898-54241022
Coord A exon
chr14:54241023-54248860
Coord C2 exon
chr14:54248861-54248957
Length
7838 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
AGATAATTATTATTTCATAGGTG
3' ss Score
5.86
Exon sequences
Seq C1 exon
TGCCCTGTGGTGGAATTTTAACTAAGCGCAAAGGGACTATTTTGTCTCCTGGATACCCTGAGCCTTATGACAACAATCTGAATTGTGTATGGAAGATCACAGTGCCAGAGGGAGCTGGCATTCAA
Seq A exon
GTAAGAATATTTAAATTTTTCTTCTTTTCATTGTACATTTGAAGTTAATCTTTTCAGAGATGACAGGACACACATAATTTCGAGAATTTCAGCCAGTGCTTTTGACTTGCATGGCTGAATTTAAAAAAAGATGTGCGTGTTCAGTCACTCAGTTGAGTCCGATCCTTTGTGACCCTGTGGACTGTAGCCCGCTAGGGTCCTCTGTCCATGGAATTTTCCAGGCAAGAATACTGGATTGGGTTGCCATTTCCTCCTGCAGGGTATCTTCCTGACCCAGAGATTAAAACCACATCCCCTGTGTCTCCTGCATTGCAGGTGGATTCTTTACCTGCTGAGTCATCAGAAAAGCCGTAAAGAAAGACACTTACCATTATTTTTTTTCACCTGCTGCTGCTGCTGCTGCTAAATAGATTCAGTCGTATCCAACTCTGTGGGACCCCATATACGGCAGCCCACCAGGCTCCTCTGTCCCTGGGATTCTCCAGGCAAGAATACTAGAAAGTGAAAGTGAAGTCACTCAGTCATGTCCCACTCTTTGCGACTCCGTGGACTGTAGCCCACGAGGCTCCTCCATCCATGGGATTCTCCAGGCAAGAATAATGGAGTGGGTTGCCATTTCCTTCTCCAGGGTAATCTTCCCAACCCAGGGATCGAACCCAGGTCTCCCGCATTGCGGGCAGAAGCTTTAACCTCTGAGCTACCAGGGAAGCCAGGTTCCTTCATCCATGGGATTCTCCAGGCAAGAATACTAGAGTGGGTTGCAATTTCCTTCTCCATTTTTTACGTGCAAGTAACAGAAAACCAATTCATGACTGCATAAGCAATAAGAAAAATATGTTGCTCCATATAACAGTGAATCTTTGAGTAACATGGTTTAAGTGTTGTTTATTGCAAAGGTTCAGTTGTATCATTCCTGACCCAGGTTTTTTCCATCTCTGTCCTGCAATACTTAGCATATTGGCTTAATTCTTGGACTTCCTCTCTCATGGTCTTGAGATAGTTATAAAATCTCTAGGCATAACAGTATTTCTCAGCAATGGATGGAATGGAATGTTTCTATGTTATGTACTTCTATAATGTCTGAGAACTTTACACAAACTTTCCAGCAGACTTTCCATTCTCTCCTGTTGACCAAATTTCAATCATATCCATTCCTAAGCCATTCACTGGACAATAGCAAAAGACTTACTATGATTTGGCTTTGAAAAAATCAAGATTAGTCATCTGGATCTGGCAAGGGGCTTATCCTTCTCTGATGTACACAGCTCTCACTCAGTTGAACAAAATTGTTCTCTGTCAGCAAGGAAGAAGAATACTAGTCTACAGGCTGTCAATAGTATCTACCATATTACTTCAATTGTGACCATTTTGTATGGGGAGCACTTTGACCAGCTACTCTGTTTGAGAAGAAAATTGTTTCTGGGAAAGTAGATAGCCTTTTACTGCTGAGTCAGTGTTTACCCCATGGAACATAATTAAACTTCACAGAACATTACACAGACTATATTTCATGTGTGGATGTGAGAGTTGGACCATAAAGAAAGCTGAGCACCACTGAATAATTGATGCTTTTGAACTCTGGTGTTGGAGAAGATTCCAGAGAGTCCCTGAGACAGCAAGGTTATCAAACCAGTCAATCCTAAAGGAAATCAGTCCTGAATATTCATTGGAAGGACTGATGGCTGAAGCTGAAGTTCCAAAACTGTGGCCACCTGATGCGAAGAGCTGACTTATTAGAAAATACCCTGATGCTGGGAAAAACAGAAGGCAGGAGGAGATGGGGATGACAGAGGATGAGATGATTGGATGGCATCACTGACTCAGTGGTCATGAGTCCAAGCAAATTCCAGGAGATGGTGAAGGACAGAGAAGTCTGGTGTGCTGCAGTCCATGGGTCACAAAGAGTAGGACACTACTAAGCAACTAAACTGAACTGAACTGAACTGATATTTCATAAAAATAACTTGCTGTTCTCCAATTGAGTCATAGGGTTTTCCTTGAGAAACTTGAGATGCATATATCAGTCATGGAAAAAATAGCCAATACGTGATTCATTAAAACTGAACTTAGATAGAAAAATAATTTTCAATAAAAAGTAAATTTTTCGATTTAACTTGATAACTTTTCAGAAAATTTAAAAAATTACTTAATAGATGTCAGGTGTCAATAGGTCAGTAAATGAATGAGAAAATTTGAAATGTACTTTTTCAGTGTTTTAAAAATATTAGCAGTCAAAATACTGCTTATATTCTGGCTAGTTGTGCTATTATTTTATGGTCAACTTTTAAAATTTGAAGATAACCAATACACTCTATCCTGTTATTGGTAGAATTAGCAAAGATTTGAAGATGGTCCATATTCCAGATGGCATAGGCAATCTGAAATGAGCTGATACCTTTAAAATCTTCATGGAACATTTATTGTATCATCTGGTTATACATTTATGCAAATTATATTAGAGCATCTATATATTGGCATCAGCTTGTCCATTTTTACCTCATCTTAAAATAATAAACCCCTGGCATTTTCCCTCTAGTTCTCACCCTCTGTTCCCAACCCCCTGTGATGTTGCTTCAGCGTCCAATGCTGTATTTGAGTCACTCTTATAATGATCGGGGCTTCCCTGGTGGCTCAGAGGTTAAAGCGTCTGCCTCTAATGCGGGAGACCTGGGTTCAATTCCTGGGTCAGGAAGATCCCCTGGAGAAGGAAATGGCAATCCACTCCAGTGTTCTTGCCTGGAGAATCCCATGGATGGAGGAGCCTGGTGGGCTACAGTCCACGGGGTCGCAAAGTGTCAGACAAGACTGAGCAACTTAACTTTCAACTTTCAACTTACAATGATCACTGAGGAACATGCCATTAAATCCACTGCACTGCTCATCTTCCTTATTTTGTTAGCAACATTCTGTCGTGTCCATTCTCCTCTCACTCTTAAGATATCTTTCCCCTCCATTCTACCTAATACTCTCTTGAATTTTGTTTTGTTTTCTTTTCTACATTTATAGTTGTCGCTTCTATATCTAGGAGCACGATCTCCTCTTCTTCAATTCATCAAATATGGTGTTTGTGAGATTCTGTGTTCTTTGTCCATCTCACGTGGCACCATTCTCTGTGCCACGTTGTCTACTTTCATAGCGTCAGTTACTATTATGTGCTGATGCTGAATCGTAGTAGATAATTAGAAAATATCTTTTTAAATTAAGGATTGAATAAATGATGATTTCCAAACCTAATATTTAACCTATACATTTCACCTAAGTTTGCCATTTATCCAACTGCCCACAGAACATTTTCAGCTAAACTTTTTACATCTCTCATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTTTATTCATTTTGGCTGTGCTGAGTTGTCATTGCTGTGCACAGCCTTCCTCTAGCTGCAACGTGGGAGCTGCTCTCTAGTTTTAGTGCACAGGCATCTCATTGGAGTGGTTTCTCTTGTGGAGCATGGACTCTAGGGTGCATGGGATTCAGCTGTAGGGTGTGAGCTTAGTTGCCCTGCAGCATGTGGGATCGACCTAGTGTCCCCACATTGCAAGGCAGATTCTTAATCACTGGACACCAGGGAAGCCCCTAAACTTCTTACACCTCTAATTCAACCTGTTCAAAACTGACTTCATGACTTTTTTTTCTCAAAGTTGTGAATCTTCCCCATTTTGCTCTCTCAGAATGAACCCCTCATCGCATTCAATTGCAGCAGCCAAAAACCTCGATGATTTTTTTTGTGTTCACGTACACAAAGAACTATATCAGTTCTTTAACAAACCTCTCAAAGTCTATTTTCTTCATCCACACTTTGACCACTCAAGATTAGGTGGCCATCATCCCTGTTCCAGGTTCTTATTCTCCTCCAATCTATTCCTCACAGGGCAAAGAGAGTAACTTTCTAAAAATAATAATCTAATGCTCTAAGTTTCCTGCTTTACAATACCTCGATTGTCCTCTCTATCCTGAACTCCTTGACACAGATGATTACGCCTTTGTGCTTTGTCCTTATTTCTTGCCTCTATTTCACTTATTTATAGAAACCTGACTCTCTCTTGCCTCTGGACCTTTGTAAATGTTGTTCCTTTTACTGCCAATACTCTCCATCATATCCTTTATTTGGTTTATCCTTCCTCATTATTTCTATCTCACCTTAAAAACAGTTCCTGTGGAAGACCATCCATGAACTTGAAGCAACGTTAAGCCCTCTTGCTACATGTTCACATTGATCACTGCAATATCCTTATATCATGATACCCATCATATGTTACTGTTTTGATTTGTGTGCTCAGTTGCACAGTCCTGTCTGACTCTTTGTGACCCCGTGGACTGTAGCACACCAGGCTTCTCTGTCCATAGGATTTTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTGTTTTTACTTAATTACCTGTAAGTTCATGGCGTAAGTAACTAAATCTTTTCTGACAGCTAGCACAGAGCCTAGCAGTCTGTGCTCAGTAATTATTTTTCAAATGAACCAATGAATATTTCCAAAAGCGGTGAAGTTTTAGGCCACTTTAAGGAGTTAACATAGAATACTGGACTAATACTGAAGATAAGGTTATGTTCTATATCATTGTCCTGGCAAACACTGTTCACAACTAGAAACCTTGTATCAATGATGCTATGAGATCTTTCACTGAAGTAGCATTTCATTTAATGATTGTACCTTAGAAAACAAAGTTTGAGTTTAGCACAGTATTGGTCAAAGTTACAGATTGTGAAGCATATTTTAATGTAAATACTTTGTATAACTACAAAGTGCTCTTTCCTAATTAACCTCTTATATGTTTGCTAATTTTATATGTCCGTGGAGAAGAAAATGGCAGCCTGCTCCAGTATTCTTGCCTGAAAAATCCAGTGGACAAAGGATCCTGGTGGGCTGCAGTCCCTGGGGTCAAACGTGACTGAGCAACCGAGCACAGTTTTAGATGTATCACTAAATCATAGAAAATTATAACACACACACCCATAATTTAGGACATATTTGAAATTTCACTAAATTCACCTAAAAGCAACCTGGCTAGTACACCAGATTTAAAGTAATGTTTATTGTCTTTTATTCTTTTGCACTAAACATATGTGCAAATAAAGATTTATATGAATATTCAGTAAATCATATATGAAATGGGATAACCACTGGTAGAGAGAAGAAACATTTGTAATGCTGAAAAAGTTACAAATAAGATAGAATGACTGAGCATTTTTGGGAAATAACCTCAACAAATAAACTAACTTATTATGTTTCTATTACATGAGTGGGAGGAGTATATTCATTTTTTTCCCTGTATATTTTAGCAAGGTATATTGGAGGCAGAATTCCAAAGAAGCTACAGTTAATAGTAATGGAATTATCAAGCAAAGAGCAATCTTTAAAGTAAAATGGGATTTGAATGTCTCTATAAGGTATATATGGTTTTAGTTATTGGAAATCCATTACCTCATAAAGCTGTCCTGTTGTCATAATGGACAACTCCATCTAATTTAAAGTTCTTCTGAACACTGAGTCTGTATCTTCTCCTTTTTAAGGCTTTTACTTGACTCTCATTTGACTTTCTGTCACAATGAATCTTCAACCATTTACTTAATTATCCTACACTTCTATGTATGCCAAACAACATTCACAACTTGCACAGAATCCGACTGGCAAATTGCATTAGTTTTCTGTGACTCCTGTAACAAAGCACGAACTCACAAGTTTAAAACAACCGAAATTTTTCTTTCACGGTACTGGAAGCTGGAAGTCCCAAATCAGTCTTACTGCCCTGAAACAGCAGTGCTGACAGGACTGCACTCCTGCCACCGTCCAGCTCGCCTCTGCTCAGCCTCCAGGGAAGAGTCCTTTCCTTGCCTCTTCCAGTTCCTGGTAGCTGCCATCATTCCGTGGCTTCTGACTTGTTCAGTCACTAAGTCGTGTCTGACTCTTTGCAACCCCATGGACTGTAGCACACTAGGCTTCCCTGTCCTTCACTGTCTCACTGAATTTGCTCAAACTCATGTCCGTTGAGTCAGTGATGCCATCCAACCATCTCATCCTTGGTCATCCCCTTCTCCTCTGACTACATCCCTTCAATCTCTGCTTCTGTGATCACGTTGCATTCTCTTCTGTCTGTGTCAAATCTTCCTTGACATCTTATAAGATCATCTGTGATTGCCTTAAAGGCTCATTTAAATCATCTAGGATAGTCTCCCTATCTCAAGATATTTAGTTTATTCACATTTGAAAGATTCTTTCCCATACGAGGCAATATTTACAGGCTCAAGGGATCAGAACCTGATTATTTTGGGGAGTTATATTCACACATAAATGTCCAGAATTAAACAGATTTTCTTCTTCTTACAAAGGTAATAAGTTTTCCTCTAATCTACCCCCATGGCTTGTCTCTTCTACATTTTTACCAACTCAATAACTTCTTTCCATGCAGAACCTTGCAGTATATTTTGCTTATTTCAAATGTCAACTCCTACAAAAATCCTTACTTCTGTTTTCTTTTTCTTGTTTTTTAAAGCCAAATATGACTTTTTATTTTCTTGAAAAGAAGGAAAAGTCAGATATGAAGAGAAAACTGACCATTTTTTAAGGAGTTGGTGATTATATTGCAATCATACAGTTTTAATTCCAGTCTTCCTCCTCTCCTGGAACATTGCCATTCGGCCTAAAGCCTGTCACACAGGCAGGGTATCTGTTGCCATGTGGCACTCACCTCTGGAAAAGAGGCATAAGCATTTATTTGAATGGAAGAATGGTGATGACCTATTTTGTGGATAAGAAAAATTTTAATGAATGCAATTGTTAGAAGTATTTAGTAAATAAGTGAAATGCTTATATTTATAACAGACCTTAGCTAAAAAGAAATAAATTTATTTGAATAAGACTATTCCTTTACCTCCTCCTAAACTATAAAATATGTAATAAACAAAGAAAAATAGACAACATCCATAGTTGTGAGGGTTCTGTGGGTTCTTGCAAAAATTCAAGCTGTGCCAAGTGAAGTGCAACAAAGTAACACATGCCTCTTTCTTTAAATAAAATTTGATAGACATGAGAGAATTATACTCAGCATTTCCCTTACCAACTTTGTGAATCTTCACAGTGATTTAGTTATCATGATGCTGTTTATAAAAATATAATCATTTATGAAATTAATCTTTAAAAGACATATCCAAATCAGTTATAAAGTATTATTTTTGGTTATTCATATTGAAATATATCAAAAATGTGTATAAGGGATTATTATGTTAGTTTGTAAAATAAAATAAAAACAGGAAATTTAACAAAGATTATACAAAGTAAAACATAATAAAATGTATCCAGGATAAACCTAGTTCAAAAAGATATATATTATAGTCTTATATGGTGCTTTGTGTGGGCCAGAAATCTGCTTATATCCTAATAGGTAAAGCAGATGAGAAAAGTCAGTACAAAAGAATCAAACATTCTAAAACAAAACAAAACAAAAATTAATCAATTGTTTGGAACATGGCTTAATTCAGATTCTAGGCACTAAGACATTGGATTAACGCAATAAGGTGGTGACGGACATTCTCAGTGCTATACCAGTAGTGAACACTGCTAGATACCTCAGAGGCTTTTATTATAAAAGTCAGTGTGTGTATGCCAGTGCCATAAAGGCAATGATCGTTTCTGTTAAAATGCTTCCATGGAGAGCCACAATGATATGGTCCAGGCTTTGAGGTCTCTCTTCCAGAAGAGATGAGTGAACTATAGTATATGCATCACATTAGAAGTATGTGTTCTTACAGATAATTATTATTTCATAG
Seq C2 exon
GTGCAAGTTGTCAGCTTTGCTACAGAACATAATTGGGATTCTCTGGACTTTTATGATGGGGGAGACAACAATGCCCCAAGACTTGGAAGTTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038281:ENSBTAT00000027766:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(36.8=92.9)
A:
NA
C2:
PF0043115=CUB=FE(30.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development