GgaINT0102975 @ galGal4
Intron Retention
Gene
ENSGALG00000016111 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr2:132910379-132914162:-
Coord C1 exon
chr2:132914038-132914162
Coord A exon
chr2:132910476-132914037
Coord C2 exon
chr2:132910379-132910475
Length
3562 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGT
5' ss Score
7.44
3' ss Seq
TTTTTTTTTTTTTTTTTTAGGTT
3' ss Score
13.68
Exon sequences
Seq C1 exon
TGCCCTGTGGTGGAATTTTAACAAAGCGCAAGGGGACCATTTTGTCTCCTGGTTACCCTGAGCCTTATGACAACAATTTGAATTGTGTGTGGAAAATCAACGTACCAGAAGGAGCTGGGATTCAA
Seq A exon
GTATGTATAGTTAGTATTTTCTTGTCTGTCACTGCATTTAAAACTGGTTTTCCTGATGCAAGAGCATGAAAAGACTATTTATTTGAACTTTCTTTCTCTCACTAATGGCTGTTAAGACTGAAATTATTCTATATCTTTTCATTCATACAGATCTTAAAGATGAAAGTTACAGAAATCTTAAAAGCTATATCCGTATCTTTTAACTTAGAAAAAATCACCAGTAATTCAAAATATATCATTTCAGTAGGTCATTCAGTAAGAAGCCAGAAGAAATAGATAAGCTGTCTGTGTTGTTGCTGTTGTTTTTTTTGTTTGTTTGTTTGTTTTTCCCTGAGATTGGATATATATATATATATACATATATATATCTTTCTTGCAGAGTGAAATTAAATAGATCCTTTTCCTGGGGAGATTATATGTGCTGTCCTAGAAGCTATGTTATTTTATATACAATTATGAAAGTTCGTATGGGATGAATTCCTTAAAAAACTGACAAAATTCTTCTTAGCAAAAAATTGGATTAAGAACATGGAACATATAGCAGATAAATATCCATATAACTAAGTCACGTAGTAAAATATTAAAATGAATCTTATTGGAAAGGTAGTTTTGTCTAGTATATTAGAACTTATAACCTGATCATACTTCTAGCACACCAGTTACCATGAGAACATGATTGTAAGTGTTCTATTTCTTCTCTTGCTTCAAATAAAAAAAATAAATTATTTTGTTTCTGTGTGTAAGGCTTTAGGTGCAGTTTCCTACTGGAGACCATTTGAAACAGAAGATATTTCTAAATTTGCATTTAAAGTTTTGGAAAAAAAAGCAAGAAAGTAATTTTGGATGATTTATTGTGTCTGGTTTTCAATAAATTAAAGAGCTTTTACTGTATTCTCTTGTATTCTTCAGGAAAATTTTTCAAAGTAGAATGAGTTTATAGCTTACTTCTGTATAACAATTGTAAAATTTGCATCTTTTTGTTTAAAACTATTTAAGAAGAATGTGGAGTCTTTACAGAATAACACAGAAATATAACAAATGCTACCTAAGTTCATACATGGTAACATTTTAAAGTTTCGTAATTAAATTTGAAAGCTACCAGTGCCTATCAGCAATAGTATTTAGAAAACTAAATCATATTTGAGACTGATTTTGAACACTACTTGTTTATAATAGTTGACAAAGTTATGATTCTGTGTTCTCAGTACATCCTTTACAATCAGGAATGAATGCTAAATGCTTGGTGGATCATTTAGAGCATTTTTACCAGTCTCTTATTATATCTAGTGTCCTGACTTATGCACTCAATTTCTTGAAGTATTTATCTCTTATCACAGAATGTAGTAGGTGACTAAGTTGCTAGCTTTGATTTCAAATTGTGTCTAACCTGCATGATATTCTTTTGCTTAAGAGCTATGATATGATGATGCATTTCCTAATGTTATTATTTTTTTTTAATTCTCACAAGTCTTTCTGCAAAAACACCTAGTGAATACGTGACCTTTTCTTTCCATTATCATGGACAGTCACAAAGCATGATACTTAGGCTTGATCCTTTGTCTTACCTGATTTTCAACACTAGCTCTGAGAAAGTCCCTCATATAGTGAACTGAATACGTATGATACAGGAGCTGTAAGATGGAGCATACGTCAGAAGCCCTCACACTATATTTACTGAGATATATTTGAGAACTAAGCATGGGTTTATAACCAGTAATGTCAGCAGATATGGCACTGTAATAACTTTAGTGCTTTTAATTCATAGGAAAGAGCAAAAATTATCACATATACTCATATATATATATTTATACAAGTATTATATTACATAATGTATACATATTACATATTGTATACATATATGCATATATAAATCATATGTTATTTTTATATTATTTTATATATGCATATATATGTATATAATATGTAATATTATGTAAGATGTGTAATATATTATATGCATATGTATATATACATACATAATTATTATTCTGGAATTCAGCTACTTAAAGAAACATTAGAAAACTTGGGTGTCTGATTTTGTCCTACTTGCAAAGAAATGCTAATCTTGAATATCCACAGCAGATAATGCCTTGTGTTTATGTAGATGTATAAAATATCTGGACACTCTACCGGATCAGTATTCTCTCAGTGTAGCAAAGACATTGTCCCAGCTTTAAAGGAGATTAAAATAATACATTTGCAATACATTCTCCCGTATCAAGTGTGTATGAGGGTATTTAAACTACATTGTGTGAACAACTACATTGTTGAATTTTTTGAAATAGTGTGACCAGATGTAAATGATGAACTGGGTAATCATATCAAATAATTAATATCACATCAAAAAGCAAAGATTTAAAGGTAGATTTGGGTAAATTGGAAGAAAATGAGTTGAAAACCAATCTTAAAGCACCTAGCTTAAATATCTGAAACTTAAACATCAATAATTTTATCAGCTGTAGTTCCTTATAAATTAAGTCAGAAAGGCACCTTGAGTAGATAATTTAAAACATTTAGTATAGATTCTTACTTCACTGCCTGAAGGAATGTCTTTTTTACTTACTGGTTACACTGGGAGGCTAGGGCCATAACATACATAACTTGTACTAAAATAGATGTTTTAAATTAGATGTTTTATGACAAATGCAAAAAAAAAAAAAAAAAATCCTGCAGTCAACAGCAATCTGGCACATTAAAACATTAAAACACAATCAAACACATTCAAAACATAAGAGAAATTTAAATTCAGTCTGCAGGTTTCCTAGGTACCTGTGCTTCCTACTCAGTATGTTCCTGACAGTCACAACAAGCACACTGGAAGATGTAAGGACAGAGCACAGCCCTGCCAAAAAGTACCTGGGGATACTGGTGGATGGCAGACTGAACATGAGCCAGCGCTGTGTTCATGAGAATGGTTTTTGGCTCCCTCATGAATGAGTGGAAGGATGTTATCATCTCTGGATGGAATGAAGTGAAAGTTCTGCCTATTGCTTGAAGCATGCTAGTGAATACTTTTCCCTAGGAGATCAGTCACATGTGAAAGTAGCCAAACAAGAGGCTACTCTTACCTGGAGGAAGAATTGAAAATGCAACTCATGTCATTATGGGGTTGTTTTTAATTCTGGTTAAACTAGAATCACAAAGAAGCTGAAGTAATTGGCGATAGTGTATGTTTTCCCCTCAGTGTCCTTCAAGTAGTCTGGGTATTAGCATAGTATTCTATGCCCAGGTTGCTGTGCAACTCTTGTCAGTGATAATATGTAGTTGTCACTAAGGGTCACAGAACTTAGGAGTCTGAATTGGCAATTAAATCCAAATGAATTGTATTCGCTTAATGATATGTTTCATTATCTTTACAATAACACCAAGAAACAACTTTTCATGATTGAAAGCAACAGAACTCCCAAGTATTCTGTTCTATTCTATTCTGGTCTGGTCTACAATTTGAAGTATTCTTTTTGCTTTAATACAAAGGGGATTAGGTTTATGTTCTTTACCTCTTTTTTTCTTCTTCTTCTTCTTTATTTTTTTCTTTTTCTTTCTTTTTTTTTTTTTTTTTTAG
Seq C2 exon
GTTCAAGTGGTGAGTTTTGCTACAGAACACAACTGGGATTCTTTAGACTTTTATGATGGAGCTGACAACAATGCTCCAAGGCTTGGAAGTTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016111:ENSGALT00000025958:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(36.8=92.9)
A:
NA
C2:
PF0043115=CUB=FE(30.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]