MmuINT0042939 @ mm10
Intron Retention
Gene
ENSMUSG00000022311 | Csmd3
Description
CUB and Sushi multiple domains 3 [Source:MGI Symbol;Acc:MGI:2386403]
Coordinates
chr15:47733410-47741269:-
Coord C1 exon
chr15:47741145-47741269
Coord A exon
chr15:47733507-47741144
Coord C2 exon
chr15:47733410-47733506
Length
7638 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
3' ss Seq
CACAAACTGTTATTTTATAGGTA
3' ss Score
8.72
Exon sequences
Seq C1 exon
TGCCTTGTGGGGGAATTTTAACTAAGCGCAAAGGGACTATTTTGTCTCCTGGATATCCTGAGCCTTATGACAACAATTTGAATTGTGTTTGGAAGATCACAGTGCCAGAGGGAGCTGGAATTCAA
Seq A exon
GTAAGGATATTTATTAACTTTGTCTTTTTTTCATTTTATATTTGGAATTAATATTTTCAGTAATGGCAGGGTGCACATTATTTCTTAAACTTCAGCAAATAGTTGAATTGACAAAAGTTTAATAGAAATATGTTTACTGTTAATATTTTTACCTGAAAGCACAGCAAAATCCAGCTTCCAAGAAGACAATAACAAAAACAAACCAAATTCTTTTACTACACATAATAGAATCTTGAGATAAGGAGCTCAAGGGTTTTGTATATCAGAAATCCAATAGAGTATTCTCTGGCCCAGATTATTTTCATCAAAAAACTGGCAAGGCTAGGGTAAAGATGAATTCTCCACAGACACATTTCCAGTAACTTATTCCAAGGAGAACCCATCTCCTAAAGTTTCATATCTCTGAGTAGGCCAATGACTTATGAACACATAAGTAGTATAATCAATTGAAGAGGTCAGAGCCCTCAAGATGCAATCACCTCTTAAATGCATTGATTTTGAACACTGCTGCCTAAGAATACGTCTTCAGAATAGGGCATTGTGAAGATAATCTAAAAAAAAAAAAAAGACCCATACAGTAGACATTAACATTAAAACATGACAATTGATGGCACAAAATAAATGGTATATTTCAGACTATTAAATTCGGGGTTGCTAGATGGATGAACAAGTAAATGTACTCACGGCCAAGCCTAATCATCTGGATTAGATTCCTTCTTTCACAGAAAAGAAAGAGATAATCAGCTACTGTAAATCTCCTTCACATGTACATTGTGACACTAACAAAGTTTAAGCACACACACACACATACATACATACATAAACATATGCACACACATAAATACACACACACACACAAACAAGGAGAGAGGGAGAGGGGAGGTGAAAGGGAGAGGAAGAAGTAGAGATAAATATGTAAATAATATGATTACAAAAATATTAAAGATATCTATGGGTGTGGATTATCTACTACAGCATCTGCAATCTACCAGCAGTCACACTCCTAAAGAAAACTGACTTTCATTTTCTTAGCAGCTATCAATTTTCAATAGTTTTAAGATAGGGATGGAGCCTCCGGAACAACTTCTTCCACACTGGAATCTTGACTGGTTTGATCTTGTATAGGTCTCATGTAAGGGACTACAGCTGCTGTTAGTTAAATGTCTCCCTCATTCCACAGAGTTCTTCCCTTTCCTCTGACTTTTACATTCTTTCTACTCCTGCTTTTAAAATGTTCCCTAATCCCTGGTGATAGGGTTGAAATAGATGTCACATCTATAGTTGAGTGTCCCTGCTCATTCATAGCCACTTATTCTTAGCGTTTTGTTCATATGTGGCACCTCTATAGGAACCATTGAAAAAAGCATGATTCTTTGAACACAGTTGAGAGCATCAGTTGCCTATTTAGCGGGCAATTTGACAACATGAGCATTGAGTGAAACAGCACGAAAGAGGTTCACGCTAGGGCCAATGACCTCCCTATCCTGGAGCTTTTGACTAGTTTCACAACATCATTCACAAATTCCCTCTGAGGGACAGACCTGGAATTCTACCAGGAAACAGTTGACTACCCAGTGACCACCATGCCAATATTGCAGCAGTGGATACATAAATTCAGGCAGGTTGGTATTGCAGCACTCAGCATAGAATGTTGAATAAAACAATGAATTTTTTTGCATCCAGAACCCCACAAGGCTGAAAGGTATCCAGCAGGATATTTTTCTAGTTAGCCTGAGATTGATGTCTCTGTGTCCTATAAGCCAGTGTGGTATCTGCAGATATAGGATTGTATCATCTTGTTCCTTGATTAAGCAAGCACATTTACAATGGCCTTTTGTGTTAGAAGGAGCTTCTGCAGTGGGCTTCTACAACTAGCAATTTATAGGGTGGTGTCCCATAGCTGGTGCTGAAATTTTGGTTTAATAATAAAGTTTTTTTGGGGGAGCAGTATTGTTCTCAATGCAAAACATCTTTGCTCTCATATATAGTCAGACATACATATATAATTAGCTGAAAAAGGAGTGGGTTTTCACAAAGTTTTTTTTCTTATATACTCTTAGTTTTAGTTAGCCTACCCATTTTTTGTCCTCTCCCCTATTTCATACTTAAACCTTTACCCCACAGCCAATCTCTTTCTATTCATTTGTGATGTCCATACCCTCTTTAAGGCATCTTTCCTCCTTCCTCTCATGATTCTTGTCTGCCTTTCTCCTAAATAGACATTCTGAAGAAAATAGGTTAAACAAAGACTTCAGGGTTGTACATACCTCTGGTTGTGCTCTGAAATGAGAATCACAGAGAACTTTCATTAGCTCATTCATTTATAAGGCTATAAAGGACGTCCTTGATTATTTAAATGTTATCAGCTATTTCTCTACTATCTTGTCCTATTTTTTTGTTACTCTACAGTGTGGCTTTAGTACCTAATGCTCTAATCAAGCTGTTCTCCCATGAACACCTGCATGATTAAATCTTTTGCATTGCTGATCTGTGCATTGAGACAACACAGTTTAACATTACAGATTCTCCTGTCACTCTCAAAACACTTCTCCCCATCTTAGTCATGACATCAACGTTTTCTTGGATCGTAGGACCTTTCCTTTACCCGAATCACCTGCTTCTATATTTAATCTTGTCTCTTTAATGTCAACCCCTTATGCAGGTACTAATGTTCTCAAGTACTGAGGCCTATTTACTTCAGCTTCTGTCATCTTCTTTTCAGAGTCTTTACTTCTATGCTCCTAGTGACTGTTAGGAGCTAAGCAGGACTTGGATAATAACAGATAATAAAAGAAAAACAAATGACAACAATGACAAAATGAAAAAAAAAACCTCCTTTATTTTGAAAGATGGACAGAATTAATGATAGTGTTTGTCTCAATAGAAGACGCCCACATCTATAACACCAGATTTATACTATCTACACTAGTCAATGGGTTTTACAGCTAAGTTTATTGCTAAATTATCCAATAGTAGTTCTAGGATTTTTGTCAGCAAATGATTTCTCCATTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGCATACACCAATCTCTATACAGTTTATTTTCTCAGTCATTCTCTGCATGACAATGTCTCCAACCACATTTAGTTTTCAAGCCAGAAATTTTGAATTTTATTCTGACTTACATTTGTGTCTAACAAACTGCTCCAAAATGGTCTTTCACAAGTCTCTATTTCCATTTGTGTTTTCTACCACAAAAGATCAGGTGGGTCTTATCCTTGATCCAGACATATTCTCTTTAGTCTGTTCCTAACAAAATGAATAAAAAAAATAAAACAACCAACCAACCAACCACTTCTAAAAATTAAATCTCATACTATCATATTCCTACTCATGGTACCTGCATTTCCCCATCATTTTAAACACTCATAAGTACTCATTTCTCTGTGCTCAGTACCATTTCTTAAAGTTTATTGTGTTCACAACATCCATTGCTGTAACAGTGTGACATCCATTTTCCTGTGGATACTGTGAATATTATTTCTTTTGTCTTTGACAGTAGTCAACATCTCTCCTTATTTGCTGTAACTTTGCTTTCATTTCTGTATGAAACATATTTCTGTGATAAACCTTCTATGAACTAGATAAGAGGTTAAATTTCCTCCTATATATTTTATTATAACACTATTAGATTTTCCTATCATCTGCTAATTGTCTATAAGTTCCTGAGATGAGCGGCCAACATAGTTCTGGCACATACCGCAGGACATGGCACTACAAGCTCAGTAAATACTTCTAGAAAAGTCAATGGACAGTTCCTCAAGTAATGGATTTGGAACTAATTTGGAGAGTTAGAAGTGCATAATAAATATCTACAGACAAATTGTGGTATATCCCTCTCCTTGAGCAAATACCCTCAAAAATGTACATGTCAATGCCAATATAAAATCTTTATTTAGAAAGCACAACATTTATTTATTCCACCTAGAAAACAGAATCTGAGTTTAGCAGAGTATTTAGAAATCTCATAGCATGATATGTATACTGGATTCTTAAGTACTTTATCACCTTAAAAAATAAGTCCCCATATGGACTCTATTATTGGACATATCATACTTAGTGTATCTTTTATGATTTAAGTGTAACTATTGATTGTTCTATAAGTAATATATAGGTTTGAGAAACATTTAACTTGGGAGGTTTGGAACTAAACATGTATGTATTAAGAATTATAATTAATATATCAGCTCTGAGTTGAAATGAACTAGGCTTTGGTAGAAAAACTCAGAAAAGATTCTAAAATAGCCAATATTTTATTATTGAGAGTTGTTTGTGAAAATGTCAACAAAAAGATCAACCTGTTATATTAATATGATGTGATATGTTTGTGAGAAATGATAGATTCATTTCTTTCCCTCTTTATTTTATCAGAATGTCCCAGGGACAGCTTCTTAGGAGCTGCATTTAACAAAAGAACTATTTATGAACTCATGAAGAATTACTGATTGCATAATTATTATCAACATGAATCTCCTAAGTTCCTGTGATTCCAGAATAAAGGGATAAAGTTAGGGTTTCTATCCCTGCAATGAAACACAACCAAAAGTAACATGGGATGAAAGGTTTATTCGATTTACGATTATACATTACTACTCACCATCAAAGGATGTCAGGACAGTAATTCAAACAGTGCAGGGACATGGAGGCAAGAGCTGATGCAGAGGAGATTGTGGACGCAGGACCATCATCTTATAGATAGCTCTATCTACAATGGGTTGGATGCTCACACATCAATTGCTAGTTAAGAAAATACCCCATGGGCTTGCTTTCACTCCAGTCTTATGGAAACATTGTCTTAATTGAGATTCTAGCCTACCATATAACTTTAGTTTATGTGAAGTTGACCCCAAACTATCTAGCATACTCCACCACAAACCTATCCTGCTGCCATGATGGCCAGTTTTTTGCAAGACTTCTCACAAGGCTGAAATGAAACCATATACTTTTGTTGTTTCTTATTAGACTTTCCGCCCTTGTACTTTCTCACTCATTAACTTGCATAAGAGATTCCAGAACAGTGCCTGTTAGTATTTCTGACCATTTCATGCTTCTATACTCAATATGGTGATATCATATCAAGCTATATTTCTTAGACTCTCAGTCACAAATAGTATCAGATGTTTGTGAATACTTTATCACCATGAAATAAATAGCTATTTAATTGAGTATCCAAATCTTGTATCATTATACAGACATCAAATTAGCAATAAGTCCTCGTATCCAAATCTTGTATCATTATACAGACATCAAATTAGCAATAAGTCCTCTCCTATTCCAGGTCTCTGTGAATTTCTTGCTATGCTTTCCCCAACATTGAATAAGAGCATAGACTTCTTTGCTTTGGGCCACACCCATCTGGTTTTGGCTTTTGTGGATGCTTTGCTTTCTTATTTACATTTATACTTTTTTACAGTACATTTTTCATATGTCTTACGATTTTCCATTTGGTTACTTCTTAAAGGTGCATCCCAACCCAACAAATAAGGTGATATTTATAAGCTCCTTGTATTAAGATCTGTTGCTCCTTAAATACCCTGACAAATCCAAAATTTAACAAATGTTCTTCCCCTTTTAAGCATAGCAGGCACACCTAGAGATGCTTACATGTTGTTCTTCTGCTTCTATGCTCTGAATAACTCAGGGGAAAACAGAAATTGTTCTTGATATCTAGTCTCAGTCTCTTGTTTACATCACATGGAATCCAGTGATTTCTCTCATGTGAACACATGTGACACCAAGAGTTTTGCTGTCCCACTTCTGCATCCTACCTAATTCAGCTGTCGAGAGCTTCACTTTCCACTTTCGTTTCCTCCACCAATTCAGATCTGCACTTGAAGTCTTGATTATATCCCCCTTCCAATTCGCAATCCTTTAGTGAAAAACTGAAGGCATAATTATACTTTCAAGTGCATGATTATTTTTGCTAGTGTTTAGTATTTAATCATTTTTCTCTCCTCATCTTTCTCAGCTAAGATTCTGAGCTTTCAATTTATACTACACATTAAGCTTTTAATACACATTGTTTAGCTTAAATGTTAGGGAATCTGTGAATTAGACAATTTCTTCACGATAACTTTTGTGATGAATTTGAAGCACAAGATTGACAGCATCTCTAGGCACTTAGACGTGTTTAAGTAAAGGTTATAAGGAAGTTTCAAACCCAGTGACCCTGACTTGTGTTTCTTGTATTTATCACTAAGCATCACTCCTTGTCTGTGTTCTATTGTGCTTCTAACCATGCATTCAGTTTTCCTCTTACATAGAGATTCTCTCTACTGTGGCTAAATTGGATTACTGAGAGTTCACTGAGTCCAGATCATAGTTTGATTCATCCACCATTTCACACTCTTAATAATTTCCTTCCTGTAGAAGCTTCTCATTACCATAAGCTCAGATCAAAAGTCAACTCCTGCATGAATCTTTACAAGGTATTTTTAGCATAGTATAATGTTTTTTTTTTTTTACACTGGACTGAAGAAAAGAAAAATTCGGAAAATAATTGGGAATGAATTATTGTTTAAGAAAGTAATGGTTGGAGCTTTAATCCTTGTGGTTCTGGAACAGTACATTAGATCAGCTGCCAATCACGCAGGCAGGATATCTCCTGCCATGTGCCACTCACCCCTGGAGCAGCAGTGCCAGCATCTACTTGAATAGGAGAGTGATGGAGGGCTGTTTTGCAGAAAAGAACGGTTTAATGAGCAGAATTGTCATAACTATGTAGCAAATGAGTACCTACACTTATAACAGAATCCAGTTAGTAAAAATGAATGCATTCTCATAAAATTCTCCCTTTCCTTCTTGAAAGCTACAAAGCCGTCTATAAAGAACAGAATGGAATCCACAGTTGTGAATTCCATGGGTTCCTGGAAACTTCATACTGTGCCAAGTGAGGTACAACAAAATAGCACATGTCTGTTTCTTTAAATAAAATCTAATAGACACAGAATCATAGCCCGGTATTTGCCTTCTCACATGAGGGATCTTCAAGGTGACTTCTATTCTGACTACATTAATAAAAATAGTCTTTGAAAGATCCATACAAATCTATTACAAAATACTGCCCGTGGCTGCCTATATTGACAGTAATGTAAATATTAAAGAAAAAAATCGAATGGCTTTATACATGGAAATGAGTTCAAGAATAAGCCTACTGAAAATGCACTGCAAATCCTCTGTGCTTGTGAGCCACAGATCTGTTTATTTTCCTACAGTAAAGCAAAGAGAAAATTGAGCCACTGACAGAAGTCTAGTACTCCAAAGCATTAATGTTAGCTAGTTATTTAGAACATGAATTTGAATTCCTAGCAAATTAAGCCAAAGCATTTAGTAACAGTATGTTCTAAAATGGAGACATCAACTTCCACATTATGTCCATCATGCACTCTGCCAGCTGCTCCATAAGGCTTCTCTCATACAAATTAGTTCATGTAGACCAGTAATATAATAACCCAAAACAATTTTTGTTGATCCATCTATTATATCAACAGGGATGTTGTCTGACCTTGTGATCTGTCTTCTAGTGGGTGCCTCTAGACTGCATATCTGCTTAGAAGCATTAATTTTCACCACAAACTGTTATTTTATAG
Seq C2 exon
GTACAAGTAGTTAGCTTTGCTACGGAGCACAACTGGGATTCTCTGGACTTCTATGATGGGGGAGACAACAATGCACCGAGACTTGGAAGTTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022311:ENSMUST00000162830:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(36.8=92.9)
A:
NA
C2:
PF0043115=CUB=FE(30.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types