BtaINT0044802 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003845 | CSRNP1
Description
cysteine-serine-rich nuclear protein 1 [Source:HGNC Symbol;Acc:HGNC:14300]
Coordinates
chr22:12522421-12526290:-
Coord C1 exon
chr22:12526043-12526290
Coord A exon
chr22:12522681-12526042
Coord C2 exon
chr22:12522421-12522680
Length
3362 bp
Sequences
Splice sites
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
3' ss Seq
CTCCCCTGCCTGTCTTCTAGCCC
3' ss Score
9.51
Exon sequences
Seq C1 exon
GCTGGCTGTGCCCAGGCCCCAGAGCACCCTCGCCACCATGACCGGGCTGCTGAAGCGGAAGTTTGACCAGCTGGATGAGGACTCGTCCTCGCTCTGCTCGTCCTCCTCCTTGTCCTCCTCGGGCCACCACTCCCCTTCCTGCTCCCCCAGCTCCTCGGTTTCCCCGGCCTGGGACTCGGATGAGGAGAGCCCTTGGGATCAGCTGCCCTTGCCTGACGGTGACTTCTGTGGCCCCCGAAGTTTCACTC
Seq A exon
GTGAGTCTCTCTGCCCTGGGTACCCCATCGCACCCCTCTCTCCTTCCTCAAGATGAAATTGGGGGCGGCCCTGATGAAGTCGTCCCGGCCTCTGGAGGTTGTGTGCCCCCCGGCTTCAGCTTCCCTGCCTGCTCCCCAGCTCATCCACTTCCTGTCCTACAGAGGTCACTCGGGAATGCCGGCTCCAGCGGCATTCACCTTTGACCTTGGGACTCTCCAGCTTGGAGTCATCACGTTCAGGGCAGGGCTCCTTGGTGGCCCCAGGGCCTTCCCGCCCAGCTCTGCCCCTCAGTTCCAGTTTCGTTTCTCCCAACTGGCTCCCTGTCCTCTAGCAGCTGCCCTGCCCAAGTCCCACACCCCATGCTTCTGTGCTGCGGGGCCTGTCAGGCCGGTCCCTCACCTGGCAAAATGCTGTTTGGCTTTGCTTGAATGCAGTGAGAAGGTTTTTTCCCCAGTTAGTTTTTTAAGTTTACATGATTCTGATTTCAAACTGACAAAGAGGCCCTAGAGTGTTTCTCCACCTTATTTTTCATTACTGCACCCCCTCAACACCAGGGAGCACATGGAGACATTTCTTCTCTGATGACCCCACCGTGATGTCTTAACACCACAGATATGTCTATTTATGGACTGTATGCAGAGCTGTACACTATACGTGAAAAAGTATAGTTTTTAGCAGATACAGTCTAATAGTACATTAACTGACTCAAGTACTATGGGTTTACTGTAGAAATACAAGATGCTTTAATACTGTAAAATCTAATCATATAAATTTACCAAATGACTGTGTCAGAGGAGGAAAAATATGAGAGCTGCTGTTTGATAACATGTAATATTCCTTCTGGCAAAAGGAGAAGAGGATAGCAGAGGATGAGATGGTTAGATAGCATCACTGAGTCAGTGGACATGAATTTGAGCAAACTCCAGGAGATAGAGAAGGACAGGGAAGCTTGGCGTATTGCAGTCCATGGAGTCTCAAAGAGCTGGACACGGCTTAGTGACTGAACAACAACTACAACAACAATATTCCTTCTAGAAAAAACCCTTAGTATGATAAGAATAAGTAAATTCTGCCCTAAATGATAAAAAATACATGTTTCAACCCAAAACCATGTATTAGGATTGACGAGGAAACAATGGAAACAGCCCCACTAAGTCAGGAACCAGCTGGGGGCACTGTCTGTCACCACTGTTTGTTAACATCATTCAGGAAGTGCTAGCCAATTCAGTTAGTAAAGAAAATGAGAATTAAATACACTAGATTAGAACAGGCAAAAGGCCATGATTTGCAGGTGGTCGACTACATGATAAATTCAAGAACAGGTATATAGAAAACCTATTAGGAGGAAATTCCCTCAGATAGCTGGGTACAAAATTAATATTTAAGTCTAAATATACAGCATCGCCAAGGTTTGATGGTAACTTCTTATGGTTCAAACTAATAAAATCAGTAGTATACAAATATATGTATCGAATATGCCTATACATTGCTTACTAACTGACATATTAATAACTTATAAACAGTAGTAGACCTTTCTGAGCTTGTTGCAAAATGCAGAAGTGATAAGGGAAAAGCTTAATATACTTTTGATTTCATAAACCATAGAAATTATTTTGTAAAACCCCACAAGCAAAAATAACTAAAATATTTGTACAGATAGGTTAGACTGGTTCAGTTCAGTTCAGTTCAGTCGCTCAGTCCTGTCTGACTCTTTGCGACCCCATGAATCGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCCGGAGTTCACTCAGACTCACGTCCGAGTCAGTGATGCCATCCAGCCATCTCATCCTCTGCCATCCCCTTCTCCTCCTGCCCGCAATCCCTCCCAGCATCAGAGTCTTTTCCAGTGAGTCAACTCTTCGTATGAGGTGGCCAAAGTACTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAAATCCCAGGGCTGATCTCCTTCAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTCGGCGCTCAGCCTTCTTCACAGTCCAACTCTTAACATCCATACATGACCACAGGAAAAACCATAGCCTTGACTAGACGGACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTGAATATGCTATCTAGATTGGTCATAACTTTCCTTCCAAGGAGTAAGCGTCTTTTAATTTCATGGCTGCAATCACCATCTGCAGTGATTTTGGAGCCCCAAAAAATAAAGTCTTCCACTGTTTCCCCGTCTATTTCCCATGAAGTGATGGGACCGGATGCCATGATCTTCGTTTTCTTGAATGTTGAGCTTTAAGCCAACTTTTTCACTCTCTTCTTTCACTTTCATCAAGAGGCTTTTTAGTTCCTCTTCACTTTCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTCCCAGCAATCTTGATTCCAGCTTATGCTTCTTCCAGTCCAGTGTTTCTCATGATGTACTCTGCATATGAGTTAAATAAGTAGGGTGACAGTATACAGCCTTGACGTACTCCTTTTCCTATTTGGAACCAGTCTGTTGTTCCATGTCCAGTTCTAACTGTTGCTTCCTGACCTGCATACAGATTTCTCAAGAGGCAGATCAGGTGGTCTGGTATTCCCATCTCTTTCAGAATTTCCCATAGTTTATTGTGATCCACACAGTCAAAGGCTTTGGCATAGTCAATAAAGCAGAAATAGATGTTTTTCTGGAACTCTCTTGCTTTTTCCATGATCCAGCGGATGTTGGCAATTTGATCTCTGGTTCCTCTGCCTTTTCTAAAACCAGCTTGAACATCAGGAAGTTCACAGTTCACGGTGATTAATGTCTAACATATATACAAAGCTCCTACAAATCAGTACTTTAAGAACTATAGAGGGACTTCGGTGGTGGTCCAGTGGTAAAAACTGAGCTCCCACTGCAGGGGCACACGTTCAGTCCCTGTCTGGGACTAAGATCCTGCATGCCTTGCAGCACAGCAACCCCCACACCCCCAAGAAAAGAACTTTAGAAAACAACGAAGGGGACCTGTAAATGGCTTCTAAAGACGGGAAAGACGTTTAATCTTAACACATGCTCTCATTTGGACTCCTAAATAACAATGAGCCAGTGTCGACACAGGGTGATGTTGGACTCTCACCAGCACCAGTGTCAGCCAGGCTGGCCTAAACTCAGATCCATTTCTCTTCTGGGTGGGGTGGGAGGGTTGTGAGCAGAGATGGTTCAGCATCACTTCCCGGGGGTTAGGCCCTGCTTCATGGAGAACTAACGTCTGCCCCTCCCCTGCCTGTCTTCTAG
Seq C2 exon
CCCTGTCCATTCTGAAGCGGGCTCCCCGGAAGCGCCGAGGCCGAGTAGCCTTTGATGGCATCACCGTCTTCTACTTCCCGCGGTGCCAGGGCTTCACCAGCGTGCCCAGCCGTGGCGGCTGCACCCTGGGAATGGCCTCCCGCCACAGTGCCTGCCGCCGCTTCTCCCTGGCTGAGTTTACCCAGGAGCAAGCCCGGGCACGGCAAGAGAAGCTGCGCCTACGCTTGAAGGAGGAGAAGCTGGAGGCGCTGAGATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003845:ENSBTAT00000005016:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.225 A=NA C2=0.011
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]