RnoINT0042831 @ rn6
Intron Retention
Gene
ENSRNOG00000033433 | Csrnp1
Description
cysteine and serine rich nuclear protein 1 [Source:RGD Symbol;Acc:1305999]
Coordinates
chr8:128662789-128665845:-
Coord C1 exon
chr8:128665610-128665845
Coord A exon
chr8:128663049-128665609
Coord C2 exon
chr8:128662789-128663048
Length
2561 bp
Sequences
Splice sites
5' ss Seq
TGCGTGAGT
5' ss Score
7.55
3' ss Seq
CCCTTTCTTGTCCCTTTCAGCCC
3' ss Score
11.36
Exon sequences
Seq C1 exon
GCCGTCTGTCCTCAGCTGCTTGGAACCCCTACATCCCACCATGGCTGGGATACAGAAGAGGAAGTTTGACCAGCTGGAAGAGGACGACTGCAGCTCCTCCTCCTTGTCCTCTGGCGATCTCTCTCCCTCTCCTCCCAGCTCTTCTGCCTCCCCTGCCTGGACCTCTGAGGAGGAGGGACTGGGTGATCAGCCACCCCAGCCTGATCAGGACTCCAGTGGCATCCAGAGTTTAATGC
Seq A exon
GTGAGTCTCCTGTCCTGGGCACCCCCTACCACGCACCCCCCACCCCTAGCCCCCACCCCCTGCTTCTTCCTTCCCTAAGGCTGTAATTGGCCTTTTTGGCCTCCATAGCCCCCTCAGGGTACCTCCTTCTGTGAAGTCTTATGACTGTCCCACTCTGCAGAGGCACTTTGACTTCCTGTTGACTGTGGGGGTTGTGCTGTCGGAGATGTTGTTCCCTGAGTGGCTCTGGGGCCTTTCCAGGGGTGTTGCATCTCTGTTTCCCAACATACCTGCCCCTTCCAGGAAGCCCGCTGGGGCTCATCCTTCTCCTCACACACCCCACGAACACTGTACACTGGCCTGCTAGGCCACTTCCCTCTTCCTTGCTTTTTAGCTTTTTTCCCCCCCGAATGTCCCCAAAAGGGTTTTTCCTGAATAGTTTTCTTTTCACCCTTTATCTTATCTTATTTTAAGTTAAAAAAAAAAAAAGACTCTCTCTTCCAACCGCATGGCATCTGCCTCCGGAGTACAGGGGTTACGGATGCGCTCCGCTCCATCATGGCTGACTTCCTAGTTATCTTTCAAGCTTGTATAATTTTGATTTCAAACTGAAAGTGATTCTCTTTAAAAAAGGGTTTTTTTATTTTTGAAATTATAATTACACCATTTCCCCTATCCTTCCCTCTAAACCTTCCCATATATCTGTCCTTACCCTCTTTCCAACTCATGGTCTCTTTTTTATTATTGTTACATAAATATATAGAAATATATTTCTAAATATTGTACAAACCTGCCTTGTCTTTATAATGTAAAAACAGCCTTTGGGGCTGGAGAGATGACTCAATGGTTAAGGGCACTGGCTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCAACAGAGTACTCAACATGCATAAAATAAATAATAAATCTTAAAAAAAAAAAAAAGACAGCCTTTGATTTTCAACAAGCTCTTTCTACTTCAAGAACCATTTTAAACAGTTTTCCCCTACAAGGGGAATGTTTTTAAGCACATCTCCCTGTGAAGTTTTGAAACCATAACTGTTCTGTTCATGTCTTATATGCATACCTGTGTGTTACACTTTTTTTTTGAAACAAGTGTGATTTTGTTAATGCCTGGAACCTAATATTACAAACAGAAAACCTTGTAGAAGGAATTTCCTCAGGTAGTTGAGTACAAAGTTAATATGTTAACTTGAAGTCACTCAGCATAGTGGCAAACACCTATATTCCCAGTACTGGGGAAGGGCTAGGGACTCAGTGTCTCCTGCTATAGAACCAGTCCTAGCCATCTTGAGATAAATGATGATGTATGCCTTTAATTCCAGTTCTTGAGAGACAAAACCTGGTGGGTCAAGGCCAATCTGGTCTACGTATCAAGTTCTAGGACAGTCTGTGTTATACAGTGAGACCCTGTCTCAAGAGAACGTAAACACGGGCCAAGATGGCACCGGAGAATCCTGCTCTTGCAGAGGACCTGAGTTTGGTCCTTCTCACCCACATCAGATCACTGACAACCACCTGTAGCTCCTAGTACTTGGGATCTGGCACTTTCTGAACTTCAAGAGCACCCACACCCAGGTGACATACACTCGCACACGCACTTAGTAAATTTGAGCCTGGGCAGTGGTGGCACATGGCCTTTAATCCCAGCACTCAGGAGGCAGAGGTGGGCAGATCTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTTAGTTCCAGAACAGCAGAGGCTACACAGAGAAACCCTGTCTTGGGGGGGGGGGGGAATCATGTACAAAAATAAGTTTGGAAACAACAACAACAATTAATGCCACTGGGGTGGCTCAACATGTAAAGGTGCTCTCGGCCAAGCCTGATGTTGGGTTCCTGAGTTCAAACCCACATGGTGGGAGAACCAGGTCCTACAACTTGTTATCCATATAATCAATAATTTCAGAGAGGGAGACAGACAGACAGATAGACAGACACATTCTGGGTCTGTTGCGGAACATTTAAAGTATAAAGGAAAAGGTCTATAATGTATGTCTATAGTGTATGAGTATTTTGCCTGTATATCCATGTACCACATGCATGTTATACCTGAGCAGGCCAGAAGAGGGCGTTAGATCTCCTGAAACTGAGTTCCTTGGCTGCGACCTCTCCTATGGGCACCAGGGCTCTTAACTGCGAGTCATTTCTCCAGTTCTTTGTTATACATTTAAACAGGGGATTATATTGTCTTTGCTACATGTAAAGAATTAAAATGAAAGAAAACTGTACAAAGGATTTATAAATTCATGGTCATGATAGCAAGATGCTTCCTCTTTGAATGCAGTTCTCTGGTCTGGTAGATGATAAGCCCGGGTTGGCTTGGGCTTGTTCTCCAGATCCAGCCAGGTCTGACTTTTACGCTCAGATCCAAGGTGGGTGGAGAAAGTGAACGGGTCCGAATCTTCCTAGAGATCACACCGCGTCGGGGAGGACTCAGTGCCCTTTCTTGTCCCTTTCAG
Seq C2 exon
CCCCATCCATCCTGAAGCGGGCTCCTCGGGAGCGTCCGGGTCACGTGGCCTTCGATGGCATCACTGTCTACTATTTCCCGCGGTGCCAGGGATTCACCAGTGTGCCCAGCCATGGTGGCTGTACCCTGGGCATGGCTTCTCGTCATAGCACCTGCCGCCTCTTCTCCTTAGCCGAGTTTAAACAGGAGCAGTTCCGGGCTCGGCGTGAGAAGCTCCGTCGGCGTTTAAAGGAGGAGAAGCTAGAGATGCTGAAATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033433:ENSRNOT00000050543:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.985 A=NA C2=0.172
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]