HsaINT0042477 @ hg38
Intron Retention
Gene
ENSG00000144655 | CSRNP1
Description
cysteine and serine rich nuclear protein 1 [Source:HGNC Symbol;Acc:HGNC:14300]
Coordinates
chr3:39144997-39146722:-
Coord C1 exon
chr3:39146478-39146722
Coord A exon
chr3:39145257-39146477
Coord C2 exon
chr3:39144997-39145256
Length
1221 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
3' ss Seq
CATCTTTGCCTGCTTTCTAGCCC
3' ss Score
7.08
Exon sequences
Seq C1 exon
GCTGTCTGTCCCCAGACCCCAGAGCACGTCCGGCACCACCATGACTGGGCTGTTGAAGAGGAAATTTGACCAGCTGGATGAGGACAACTCCTCGGTCTCCTCCTCCTCCTCTTCCTCTGGGTGCCAGTCTCGCTCCTGCTCCCCAAGCTCTTCTGTCTCCCGTGCCTGGGACTCAGAGGAGGAAGGCCCCTGGGATCAGATGCCCCTGCCTGACCGTGACTTCTGCGGCCCCAGAAGTTTCACCC
Seq A exon
GTGAGTACTCCCTCCCCTGGGAACTCCATCACCTGCCTGCCTTCCTGAAAGATGAAATTTAGAAGTCCCTGACCAAATGCCTTTGGCCTCTGGTGGTTAGGTCCCCATGGCGGTAGCTCTCATGAGCTATAATATAGTGGTCACTCAGTGTCCACTGTCCAGGGGCACCTGAGCCCAGCTAATTCACCTTTGACCTTGGGAGTGATGACATCCGGGATGCAGCTCTGCAGAGTGCTCTCAGGGCCTTCCCGGTCTGGCCCCTCCCTTCTGTTCCAGTTTCGTTTCTCCAATGAGCACCCTACCGTCCTACAAATGGAACTGCTGGAGTTCCCCGCCCGCCCCATGCTTCTCTGCCACGGGGCCTGTCAAGCCGGTCCCTCTCCTGTCAAAATGCTGTCCATTTTGCCTGAACATAGTGAAAAGGGGTTTTTCCTGGTTATTTTCAAGCTTGTATAGTTGTGATTCCAGACTGATGAACATGGCCCTAGAGCAGTGTTTCTGGACCTTATTTTTCATTATTGTTCCCCAGGAAGCCTATTTAGACATTTTCTCCTTAATTATCCCCCACCATGAAATTTTAATACAATAGATGTGCTGTTTACCTTTTTATGTACTGTAGGTATATATCTGTGCATTACACATAAAAAGAATATAATTTTTAGCACATGGAATCTAACAGTATAAACAGAAAACCTTTTAGAAGGGAATTCCCTCTGGTAGCTGGGTACAAAATTAATATAGTAAGTTGAAATATATGGAATTTCCAATATTTGACCATTACATGGTAATTTGCTATGGTTCAACCTAATGAAAATACCAGTACATAGCTTACTAATCAATAAACATTAACTTGTAAAGGGAAAGCCTTTTTAAGCCTGTTGCAAAACACAGAAATCCTACAAATCAATAAAAAACAATAGAAAACTGTACAAAGGACCTGTACATGGCTAATAAACATAGGAAAGATGTTTAATCTTACGAATACTGTCATTTGGACTGGTAAATAACAATAAGCCAGTTCTGACATGGGTGTGGTATTCAGTTTCAGCCGCTCCAGTCCCAACCACACAGGCTCCTAAATTCACATTTCTTTTTTCAAAATGGGTGGAGAGGGAGGAGGGAAAAGGTGGGAGGCGGGAGGGCAGTCTGGCATGATCTTTTTGGAGGTAAGTTGTGCCTCACTGAAAACTAATCCCCAGCCCATCTTTGCCTGCTTTCTAG
Seq C2 exon
CCCTGTCTATCCTGAAGCGGGCTCGCCGGGAGCGCCCAGGCCGTGTAGCCTTTGATGGGATCACCGTCTTCTACTTCCCCCGCTGCCAGGGCTTCACCAGTGTGCCCAGCCGTGGTGGCTGTACTCTGGGTATGGCCCTTCGCCACAGTGCTTGCCGTCGCTTCTCTTTGGCTGAGTTTGCGCAGGAGCAAGCCCGTGCACGGCACGAGAAGCTCCGCCAGCGCTTGAAAGAGGAGAAGTTGGAGATGCTGCAGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144655:ENST00000273153:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.261 A=NA C2=0.057
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCAGCTGGATGAGGACAA
R:
ACTCAGCCAAAGAGAAGCGAC
Band lengths:
356-1577
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development