MmuINT0043178 @ mm10
Intron Retention
Gene
ENSMUSG00000032515 | Csrnp1
Description
cysteine-serine-rich nuclear protein 1 [Source:MGI Symbol;Acc:MGI:2387989]
Coordinates
chr9:119974154-119977245:-
Coord C1 exon
chr9:119977002-119977245
Coord A exon
chr9:119974414-119977001
Coord C2 exon
chr9:119974154-119974413
Length
2588 bp
Sequences
Splice sites
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
3' ss Seq
CCTTCTCTTTTCCCTTTCAGCCC
3' ss Score
12.05
Exon sequences
Seq C1 exon
GCGTCTGTCCTCGGCTGTTGGAACCCCCTACATTCCACCATGACTGGGCTACTGAAGAGGAAGTTTGACCAGCTGGAAGAGGACGACTCCAGTTCCTCCTCCTCCTCATCGTTCTCTAGCCGGCTCTCTCTCTCCTCCTTCCCCGCCTCTTCTGCCTCCCCTGCCTGGAACTCTGATGAGGAGGGACCAGGTGGTCAGGCACCCCAGTCTGATCAGGACTCCTGTGGCCTCCAGAGTTTCACTC
Seq A exon
GTGAGTCTCCCATTCGGCTCCCCCCAACCCTCCCCCTTCTTCCTTCCCTAAAACTGAAATTGGCGTTTTTGGCCTCGGTAGCCCCCTCAGGGTGCCTCCTTCTGTGAAGTCGTGTGACTGCTCCACTCTGCAGAGACACCTTGACTTCCTGTTGACCGTGGGGGTTGTGCTGTTGGAGTCCGAGACTTTGCTTGAGTGGCTCTGGCTCTGGGGCCTTAGAGGGGTGTTGCGGCTCTGTTTCCCCGGCACACCCTACCCCTTCCAGGAACACCACTGGGGCTCATCCCTCTGCTTCCACCCCCCCCCCTGCACTAGGCCTGCTAAGCCTCTTCCCTCTCCCTCCATTTTAGCTTCTTTCTGAATGTCCCCAAAAGGGTTTTTCCAGAATAGTTTTCTTCTCTTCCTTTTTTTGAGAGCACACTCTCATATAATCCAGGTTGCCTTCCAGCTGTGTGGCATCTGCCTCCCAAGTACAGGGATTCGGGATGCACGCCACCATGGCTGACTTCCTGGTTATCTTTCTCTCTTTTTTTTTCTTTCTTTTTTTAAAGACTTATTTATTTTATAATATGTGAGTACACGCTCACTGTCTTTAGACACACCAGAAGAGGGCATCAGATCCATTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAATTCAGGACCTCTGGAGGAGCAGTCGGTGCTCTTAACCTCTGAGCCATCTCGCCAGCCCCCTCCCTGGTTATCTTTCAAGTTTGTATAATTTTGATTTTAAACTGAAAGATGGTCTTGATGGTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTTTCAAGACAAGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGTGCCACTATTGCCCAGCGATAGTCCATTTTTTAAAAAAATTATTTCTTTTTATTTTTGAGATTATAATTACATCATTTCCCCTATCTTCCCCTCCCTCCAAATCTTCCCACATATCCGTCCTTATCCTCTTTCAAATTCATGGTCTCTTTTTTTTTTTTTAATTATTGTTACATAAGTCTATACAGCTATATTCCTACATATATAACTCCAGCCTGCTTTGTTTTTATAATGTAAAGGCAACCTTTGATTTTCAGCATGCTCTTTCTCCTTCAAGAACCATTTTAGACACTTTTCCCCTACAAGGGGAATGTTTATAAACACAGGATTACGTCTCCCTATGAAGTTTTGAAACCATAGTTGTTCCTTCCATGTCTCCTATACAACATACCTGTGTGTTGCATATTTTTTAAAAAAGTATGATTTTTAATGCCTGGAATACTAACAGGAAATTTCTTAGAAGGAATTTTCTCAGGTAGTTGAGTACAAAGTTAATATGTTAACTTGAAGTCACTTGGCAAACATATAATCCCAGAACCGGGGAGGCAGGAGGGCTGGGGTTCAATGTCGCTTGCTGTTGAACCAGTCCTAGCCAGCTTGGGATAAATGATGGTGTATGCCTTTAATTCCAGTTCTTGAGAGACAAAGCCTGGTGGATCAAGACCAACCTGGGCTACGTATCAAGTCCTCGGACAGTCAGTGTTACATAGTGAGACCTTGTCTCAAGAAAACATAAACAAGGGCTAGAAGGATGGCACAGTAGTTAAGAGAATCTTGCTCTTGCAGAGGACCCAAGTGTGGTCCTTAGCACCCACATCAGATGGCTCACCACCACCTGTAGCTCCTAGCACTAGGGATCTGGCGCTTTCTGAACTTCAAAGGCACCCACACCCAAGTGGCATACACTCACACATGCACTTATTAAAAATAAGTAAGTTTGAATTGGGCAGTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAATGAGTTTCAGGACAGCCAGGGCTACACAGAGAAACTCTGTCTCAGAAAACCGAAAGAGACAGACAGACACACTTTCTGGGTCTGTTTCAGAAGACTTAAACTATAAAGGAAAAGACCAATGACACAAATATATATTTTTAATTTATGTGCATGAGTATTTTGCCTGTGGATATATGTCTATGTACCATGAGCTTGTTATGCCTGAGGAGGCCAGAAGAGGGCGTTAGAGCTTCTGAAACTGAGTTTCTTGGCTGCGACCTCTCCTGTGGGTGCCAGGGCTCTTAACTGCTGAGCCATTTCCCCAGTTCTTTGATATATGTTTAAACAGGGGATTATATTATTACATGTAAAGAATAAGAATTACAGAAAATTGTACAAAGGATTTATAAATCCGTGGTAAGGGTGGCAAGACGCTTCATCTTTGCGGGTTCATTTGTGCTGAGAAATGACAGTTAAGCTGGTGTTGGGTTGGGGGTGGTATTGTTCTCCAGATCCAGCCAGGCCTGGCTTTTAAGTTCAGATCCAAGGTGGGTGGAGAAAGAGAAGGGGTTGGAATCTTTCTAGAGATTATACCACATCGAGGGAAGCTCAATCCCTTCTCTTTTCCCTTTCAG
Seq C2 exon
CCCCGTCCATCCTGAAGCGGGCTCCTCGGGAGCGTCCAGGTCACGTGGCCTTTAACGGCATCACCGTCTACTATTTCCCACGGTGCCAGGGATTCACCAGTGTGCCCAGCCGTGGTGGCTGTACCCTGGGCATGGCTTCTCGGCACAGCACCTGCCGCCTTTTCTCCTTAGCTGAGTTTACACAGGAGCAGGTCCGGGCTCGGCGTGAGAAGCTCCGCCGCCGTTTAAAGGAGGAGAAGCTGGAGATGCTGAGGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032515:ENSMUST00000035101:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.664 A=NA C2=0.257
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types