DreINT0052812 @ danRer10
Intron Retention
Gene
ENSDARG00000038429 | csrnp1b
Description
cysteine-serine-rich nuclear protein 1b [Source:ZFIN;Acc:ZDB-GENE-030131-1515]
Coordinates
chr24:19564706-19567213:-
Coord C1 exon
chr24:19567011-19567213
Coord A exon
chr24:19564966-19567010
Coord C2 exon
chr24:19564706-19564965
Length
2045 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
CTCTCTCTCTCTTTCCTCAGCAA
3' ss Score
10.38
Exon sequences
Seq C1 exon
ATCACCAAACGCTTGCGCCATGAGCGGGGTTCTCAAGAGGAAGTATGAGGAGGTGGCGGAGGACCCGTGCTACTCCTCCTCATCCCCCTCCTCTCTCTCCTCCTCTGCCTACTCAGAGTGGGACTCAGATGGGGAGAGCTGCTACTCGGACACCCTGGATTCGACCCCCAGTAACCCTAGCTCCCCAGCAACATCCTTAAACA
Seq A exon
GTGAGTTCCTCTTTAGATGTATTCTCTATTCTCTTTATGCTTTTAGCTGTCATTAAAACCCTTTTTCAAAGCTATTTACCATTCATAAGGTCTAATTTTGTGTCCTATCTGGGAAGGTTTTATTTGTGTCCTATCTGGGGAAGGTGTTATGGGAGGTTGTAAGATTGATTGCATGGATGTTTTAATTACCCAAGGATGTTTTAATGCATGCTGGATTCTTTTGGACAGCTCCAGCAAGCCGTTCATCCAGGTTGTTAGGGTGAGTCAGGGAAGGAAAGCAAACAGTTGTGAGTTTCCCAGGATGGCAGGGCAGGCGGCCAGAGAGTGTGCCATGTGACGGAGACAGAATGAACGCAGAGCTTTGTCTGAGCACTGGGCATGAACCCAACACAGGTGCTGAGAAAGACCAAAGGGCATGAAGCAGGAAGGCAGGGATGAAGAGAAAAGGAAGGGAAACGATATGGCTGTCTGCTTGCGTTTATGAAACAGAGAGTGAAGTCAGATAATGGAGTGTAGTCTAGGTATGTTGAGTGAAAGACTTGTACAGTAACATGTATTTTAAATACTTCCAACAGAAGGCTGTAATTACTTGATTTAAACACAGCGCATTACATTTTAGAATAACTGTTTTCTACTTTTCTATTTCGTTTTAATCTTCTTTAAATGGTAGTGTACAGTCTGCACATGTATAATATTAACAATCCATGTTTTCAAGAGTATTTTTGGATGCATTTTCAGTGTTGCGTAATGATTGGCACCAACACACTCCAACCGTACAAACCACTGAACATGCTGTTTGCCTATCCCTCAACGCCTCCTTTTCATTCACTTGAAATAAAACATTCTTTCAACCCTGAATGACACAACCATAGAGTATCAGTTTAAATGTATTTGAGACAAAACAAATCTACTGACAGTCAGCCAGCATTATTGCATTACTGTATTAACAAGTGCTTTGGAAATCAAAAATCATCACTTTTAATGCTTAGCTACAAACAATAACATACCATTGTCTTCCACTGTCAAACCACTGTCTTCTCTATCTGATTGTTAGATGAGCAAAACATATTTGCACAGGGATAGAGAAAACACACTAGATTGAGTTCCCACCATTACAAGTCTAATATAAACCAGCTGTGGGGACAGTGTGAGAGTCCAATCCCTCCAGATAACAATAGTAAGCTGCCGGCCCAAGGGGAAAAAGAGCTCCTGTCTGACAGAAGCTCATGAAGTTCTACACAGAGGACAGACCTACTGAAATAACAATTTAAAACTGTAGTTTTCTTGTTTCAAGGAGAAAATTCCTCCCTTTCAGATCTTTTGACATTGGGTAAATGCAGAATTTGGCTGGTTATAGGTATAATTTGCAAGGAACGCACAGACAAATGGCCTGTCTTTATATAAAGATGGGTGTATGTTATTAAAAAAGCAGCCATCTTAAGTGCCCTCACCACTTCCAGAAACCTCAAACTTCCAGATCATTCAGCCAAAGGGTTATGATTTTGGATGCTTTACTCCCCTACACACTTTATCGCCAAGAGGAAATTCCTGTGTGGATTGTGTTTGTCAGACACGAACAAAGAGGAATGTAGTTGTTTTTGCTTATGACTAGAAACGTCTGAAAACTATTAGCTAAACTATCCATGCATCTGTTCCAATGTTGATTGGAGAAATTGGTGTTTTTATTTGGTGTTCAACCGAGTGACTGTAGCTCGTGGCATTTCCTTTTTGTGGACTGCCATCTAGTGGTGATGTAGTACACCCGCAACAATAGCATTAATGGGATCTTGATGTTTACACAAGAGACTCACCCACTCCAAGTCTTCCCATTAGGCTTGGCACACTTCCTACTCAAATACTCCCAGATGAGATCCTAGGAACAGAACTTCCCTTTCTTTTTTTCCACCACTCTAAGACATGTGCTCTTAATTTTCCATTAAAAAATTCCAAGCTTGAATTTCCGTGAGTGTACTCCACTTGTGTTTTTTTAAGGCTGTATGTCTTATGTTAATCCTATCTCTCTCTCTCTCTCTCTCTTTCCTCAG
Seq C2 exon
CAACATCTATCCTGAAGAAGGCTAAGCGCACACGGCGAGGCAACGTGCAGTTTGACCAGGTTACGGTTTTCTTCTTTCCTCGTTGCCAGGGCTTCACCAGCGTGCCCAGTCGGGGAGGTTGCACCCTTGGCATGATGCAAAGGCACAGTGCCCAACGTCGCTACACATTGGCAGAGTTTGCGATAGCACAGCGCCACCTACGGCGAGAGAAACTCAAAAATCGAATGAGGGAGGAAAAACTGGAAGCCCTTAAGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038429:ENSDART00000109107:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.387 A=NA C2=0.264
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]