BtaINT0046189 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018365 | CYP2E1
Description
Bos taurus cytochrome P450, family 2, subfamily E, polypeptide 1 (CYP2E1), mRNA. [Source:RefSeq mRNA;Acc:NM_174530]
Coordinates
chr26:50559953-50561259:-
Coord C1 exon
chr26:50561055-50561259
Coord A exon
chr26:50560113-50561054
Coord C2 exon
chr26:50559953-50560112
Length
942 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
CGGCCTGTTGGTCTCTGCAGCTG
3' ss Score
8.9
Exon sequences
Seq C1 exon
AAAAGTCGGCAGATCCCCCAAGGGCACCATGGCCGCCCTGGGCATCACGGTCGCCCTGCTGGTGTGGATGGCCACCCTGCTGTTCATCTCCATCTGGAAGCACATCTACAGCAGCTGGAAACTGCCCCCTGGCCCTTTCCCACTGCCCATCATCGGGAATCTTTTACAGCTGGATATTAAGAACATTCCCAAATCCTTCACCAGG
Seq A exon
GTAAGAGAAATATTGTTGATTTGAGGGGGGAGAATTCAGAAATTAGATGTAATATGTGTGCATTCAACTCACTCTCAGACAAATAATAATTCAATACCAGCTTGTTGTGAATCAACTGAATTACCAATACCACCCAAGAGTGATAAGCCAAATGTTATGCTACCGATGCAGCTTGGGCATGCTGCTCAGTGGGCACTGGTCATGGTTGCCCAGAGGCCCTGCTTGAGCAGTGCTAACTGCCTTGTCGTTGGGTGGCTTGGCAGCCCGGTGTGGCTGTGGCTGCTGCCTGCCGCTGCTGTGCAAGGAGGGACCTGCGCTGACACCTGATGCACACCGGCTGGGCATCAGTCTGCAGCTCTCCTTAGGTGCCAAAGAACAGGAGGAAAAGTGAGGTGTTTGACCCCTACACACAGCTCTTACTGCATTTGTTGTGACCAGTGAATGAGCTCATAACTCTAGAAGCTAAATGCGTTGATGAATCTATTAAAAGAGTTAACAAAAGAGTGTCCTAGGGCACAGAGCCGCTTTACAAGGCACTGATGAGCGTCACGCTCCAGGGGGGAAGACGGGCTTGGGGACTCTGGACAGTTCAGATCCAGGGTGTCCAACAGCATTGTAGGGTCCAGGACCTTGACTAGGAACAGCAGACTGGAGGTGGTGGGGGCAGTCACGCGGAGAGACCTCAGGAGGACGCGAGGAATCAGCCAGGCCTTCCGACTTAACTGTGTCTGGGAGGGAGGGGAACGAGGTGCAGCCCGGTGCGTGGCCAAGCGTGCCTGCACCGGGATGCGCTGCCTGTGGAAGAAGCCGCGGTGGGGAGGGCCTTCCCCAGGTTGCTCTGGGTTCTCCTGGTCAACAACAGTGGCCTTGGGGATCACGTTAAAGCATGGGCCTCCCCTTGGAGGCAGCGCGGCTCACCCCACGGCCTGTTGGTCTCTGCAG
Seq C2 exon
CTGGCGGAGAGGTACGGGCCGGTGTTCACCCTGTACCTGGGCTCTCAGCGTGCCGTGGTCGTGCATGGCTACAAGCCCGTGAAGGAGGTCCTGCTTGACTACAAGAACGAGTTTTCTGGCAGAGGAGAAAACCCTGGGTTCCAGATGCACAAGAACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018365:ENSBTAT00000024437:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=44.1)
A:
NA
C2:
PF0006717=p450=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGTCGGCAGATCCCCCAA
R:
TGGAACCCAGGGTTTTCTCCT
Band lengths:
348-1290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]