RnoINT0044361 @ rn6
Intron Retention
Gene
ENSRNOG00000012458 | Cyp2e1
Description
cytochrome P450, family 2, subfamily e, polypeptide 1 [Source:RGD Symbol;Acc:2475]
Coordinates
chr1:213511892-213513006:+
Coord C1 exon
chr1:213511892-213512082
Coord A exon
chr1:213512083-213512846
Coord C2 exon
chr1:213512847-213513006
Length
764 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTGTGCATTGGTCCCTGCAGTTG
3' ss Score
7.89
Exon sequences
Seq C1 exon
GCCCCAGTGGCACCATGGCGGTTCTTGGCATCACCATTGCCTTGCTGGTGTGGGTGGCCACCCTCCTCGTCATATCCATCTGGAAGCAGATCTATAACAGTTGGAACCTGCCCCCAGGACCTTTCCCTCTTCCCATCCTTGGGAACATTTTTCAGCTGGATTTGAAGGATATCCCCAAGTCTTTCACCAAG
Seq A exon
GTAAGGGGAAACATTGTTTCATTAAGAAAGCAAGTTAAAGATTAGATATAATGGATATATATTAAACTCATTGTCATTTGTTATCCAATGACAGACTACCATGTTACTGAACTAACAGTTCAGTTCATCCTGGGCATGGAACACTCACAGTGAATAGTGCCATGCAGGCCCGGAGGCCCTCTGCAGTTAAAGTGACTATGAGATACTGATGTTGCTGGTATCATTCTGTGCCAACTGATACAACAACAGGTGTACCCTGGCTGGTATCAACCTGTGCCAAAGAACAGACTGAAAAGGAAAATACTGAGCTGACCGTGATTCACCAGAATAACAGCATCTGCCTTTTGCTAATGCTGTGAACACTGTGTGGGCTAAGCAGCCCCAAATGCTATCAGGCATGGGATTAATGCTTGGTGTCTTTGCACACAGCAGGGTAGCTACAGGTTTCAGGAGCACTGAGTCCAAGTTAGCTTGTACTGTCAGATAAGGCAGAGCCTTAACTTTAGAAGCAAACAAAAGGGTAATGAGTGCTGGCATTGGCTGAATAGGCACAGAGAAGAGAATCGTGTCTAGATAGAAGGCAGGTCCCCCGCAACCCAGCAACTTAAGGTGGAAAAAGTATCCCCCTATCAGACGAGACAAAATGCCCTTTCCCCCAAGTCCGTCTAACTCCTGTGAAGTACAGTACAGGAGCAATAGCAGGAGACACGGTCTATCTAAAGCAGGCCGAGCCCTGTCTATCTTCTGTGCATTGGTCCCTGCAG
Seq C2 exon
TTGGCAAAGCGCTTCGGGCCAGTGTTCACACTGCACCTTGGCTCAAGGCGCATCGTGGTCCTGCATGGCTACAAGGCTGTCAAGGAGGTGCTACTGAACCACAAGAATGAGTTTTCTGGACGGGGGGACATTCCTGTGTTCCAGGAGTACAAGAACAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012458:ENSRNOT00000016883:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=44.1)
A:
NA
C2:
PF0006717=p450=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCGGTTCTTGGCATCAC
R:
CCTTGTTCTTGTACTCCTGGAACA
Band lengths:
336-1100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]