GgaINT0016192 @ galGal4
Intron Retention
Description
NA
Coordinates
chr14:2265647-2266821:-
Coord C1 exon
chr14:2266636-2266821
Coord A exon
chr14:2265810-2266635
Coord C2 exon
chr14:2265647-2265809
Length
826 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
GATCTTTTCTCTCCTTGCAGATT
3' ss Score
12.8
Exon sequences
Seq C1 exon
ATGGCTGCCCTCGTGCCCCTGCTCACCTGTGGGCTCTGCATGGTGCTTTTCATCGCCGCACTCCTCTGTGCTGTAAAAGGTTTGAAACGATCAGCTTCAAATTTGCCTCCTGGTCCGTTTCCTCTCCCCATCATCGGCAACCTGCACCTGCTGGACATCAGGAGGCAGGACAGGTCTCTGATGAAG
Seq A exon
GTAGGAGCAAGCACCTGTGATGCATGGGGCCCTGGGGGAGGGAGGGATGGCTGCAGTTCTCCCTCCAATGGCAGTCCTGAGATAACTGCTCGGTGCCAAATGCTGGGATTTAATAAACTGAATGTAAAGCTTTCTGGATGATGAAGGAAACTGTTCAATCCCAACTCTGCAGAGTTTGGTGGGCAGTCAATACATGAGAGCTGCCCACACGCTGAAGGCTGTGAATATCTGCATCGGTTTGGATGGATGAACCTAAACTTTGGCGTCTTTATGTTGTGAAATACTCTAAAACATTTGAGTGTCCACATGGTCAAATTGAAAGGCAGATGCTTAGTTGTAATTGCCAAAATAGCTTGTATGTCTTGCTCATGATGCTGGTTTTCTGGATGGGAGTTAGTGTAGCACAGCCCAGAGAAAAGATGTAGAGGAAATAGATTGAAACCGTGAGTGACTCGGACCTGGAACACCATGGGTAGGGCAGGGCAGGGTGTCCTGAGTTGGAAGAGACCCACAAGGATCACCAAGTCCAACTCCTGGCTCCACATGGCCTCAAGTTGCACCAGGGGAGGGTCAGGTTGGATAAGAGAAAAAATTTCTCCAAGGAGTGGTGCAGCGCTGGCACTGCTGCCCAGGGAACAGTGGGGCCACCAGCATGGAGGTGTTCCAGAGCCGCGGAGATGTGGCACTGAGGGACGTGGGTTGGTGTCACGGTGGGGATGGGCTGAGGTTGGGCTTGGTGATCATGGAGGTCTTCAACATCAATGACCTAACCAGCAGAGCAGGACGCAGTGCTACCGCTGACCACTGATCTTTTCTCTCCTTGCAG
Seq C2 exon
ATTTCCGAGAAATATGGGCCAGTGTTCACTGTCCACCTGGGGATGCAGCAAGTGGTGGTGCTGAGCGGCTACGAGGCAGTGAAGGATGCACTTCTGAACACAGCGGATGTGTTTGCAGACAGACCCCCTATCCCCATCTTCCATCAGATCCAGCATGGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004050:ENSGALT00000006446:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(15.7=53.1)
A:
NA
C2:
PF0006717=p450=FE(32.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTGCCCCTGCTCACC
R:
CCATGCTGGATCTGATGGAAGA
Band lengths:
335-1161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]