BtaINT0046206 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010419 | CYP2R1
Description
Bos taurus cytochrome P450, family 2, subfamily R, polypeptide 1 (CYP2R1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076267]
Coordinates
chr15:38430080-38440249:+
Coord C1 exon
chr15:38430080-38430092
Coord A exon
chr15:38430093-38439632
Coord C2 exon
chr15:38439633-38440249
Length
9540 bp
Sequences
Splice sites
5' ss Seq
TAGGAAAGC
5' ss Score
0.71
3' ss Seq
TTAGGCTTACTGAATTCCAGATA
3' ss Score
4.45
Exon sequences
Seq C1 exon
TACTGATTAATAG
Seq A exon
GAAAGCATTAATTAGTTAATTTAAGTTTTAGAACCTAACATTTGAGGACTTTTAGGCTGTATTACACTCATATTTTACACGCTAATTCTTCTCTTGTAATCTAGTTCTAATAAATACTGTAAATGATGTTTTAAAGAATTAGCACAAGCAGGTTTTGTGAAACAAGTATACATATGTGTGCACACATACTGGAATCAGAAGTATGTTTTAAGCTAGTCTTGAGTGCTTGGTGACATTTTATGATCATTTTACTTCTAAGTTTATAAACCCTGAAACAGCCTTTCTTAACTACTAATTAATATGATATGTAAATGAAGAACTGTACGGTATGTGTGAAGGACTAGTATTCTCTATGGTTTAGTCTTGATCAGTATCAGATGATTATATATTCAACAAGAGAGAAAGGCTGAAAGTTAATGGATGAGAAGAAAGCAACAGAAGACTAACATAGAATGTTGATGTCTATACATCCGTTTTCATAGTTAATAGTATGAGTTTTTATGAACTTCAAAATTTTCCAATTTAACGAGAGCTTCACACTTCATTTCCAAGAAAAATGCAATAGCTTGGTTACATAGACTAAAATATACATAGATTTAAAATGAAGAAGATAAAAAGTAACTATTAAATTGCAAAGCCAATCAACTTGTGCAAAGAAAATACCAACTTAAAAGGCTGAATTATCAGGCCAGGGTATGATGAACCTTGAAAGCAATAGTATAACTAAAAAGCAAATCTCCAACTTCTTAAATACTCTTCTAAGTAATAATTAGACCAACAAAGAAATTATACCACAAGTATAACAGAAGACCTTTTAGGAAATTATGAAAATGAATGATATGATCAGAATAATATTTAGGATAAAATATATGTTTTTTGGCATCGCCTTTAGTTGGAATGAAAAACATTCCATTAGAATTGGATTGGAATAAAAGCTGACCTTTTCCAGTTGTGTGGCCACTGCTGAGTTTTCCAAATTTGCTGGCATACTGACTGCAGCACTTTCACAGCATCGTCTTTTAGGATTCTAAATAGCTCAACTGGAATTCCATCACCTCCACTAGTTCCTAGTGATGCTTTCTAAGGCCCACTTGCCTTTGCATTCTAGGATGTCTGGCTCTAGGTGAGTGATCACACCATCGTGGTTATCTGAGTAATGAAAATCTTTTTTGTGTGGTTCTTCTGTGTATTCTTGCCACCTCTTCTTAATATCTTCTGCTTCTGTTAGGTCCATACCATTTCTGTACTTTATTGTGCCTATCTTTGCATGAAACGTTCCCTTGGTGTCTCTAATTTTCTTGAAGAGATCTCTAGTCTTTCCCATTCTATTGTTTTCCTCTATTTCTTTCCACTGATCACTGAGGAAGGCTTTCTTATCTCTCCTTGCTATTCTTTGAAACTCTGCATTCAAATGGGTATATCTTTCCTTTTCTCTTTTGTCTTTAGCTTCTTGTCTTTTCACAGTTATTTGTAAGGCCTCCTCAGACAGCCATTTTACTTTTTTGCATTTCTTTTTCTTGGGGATGGTCTTGATCCCTGCCTCCTGTACAGCGTCACGAACCTCTGTCCATAGTTCTGCAGGCACTCTGTCTATCAGATCTCATCCCTTAAATCTATTTCTCACTTCCACTGTATAATCATAAGGGATTTGATTTAGGTCATACCTGAATGGTCTAGTGGTTTTCCCTACTTTCTTCAATTTAAGTCTGAATTTGGCAATAAGGAGTTCATGATCTGAGCCACAGTCAGCTCCTGGTCTTGTTTTTTGCTGACTATATAGAGCTTCTCCATCTTTGGCTGCAAAGAATATAATCAGTCTAATTTCGGTTTTGACCATCTGTCCATGTGTAGTTTTTTCCTGTGTTGTTGGAAGAGGGTGTTTGCCACGACAGTGCGTTCTCTTGGCAAAACTTTGTTAGCCTTTGACCTGCTTCATTTTGTACTCCAAAGCCAAATTTACCTGTTACTCCAGGTGTTTCTTGATTTCCTACTTTTGCATTCCAGTGCCCTATAATGAAAAGGACAACTTTTTTGGGGTGTTAGTTCTAGAAGGTCTTGTAGGTCTTCATAGAACCATTCAACTTCAGCTTCTTCAGCATTACTGGTTGGGGCATAGACTTGGATTGCTGTGATATTGAATGGTTTGCCTTGGAAATGAACAGAAATCATTCTGTCATTTTTGAGATTGCATCCAAGTACTGCATTTCGGACTCTTTTGATGACTGTGATGGCTACTCCATTGTTCTAGGGGATTCTTGCCCACAGTAGTAGATATAATGGTTATCTGAGTTAAATTCACCCATTCCAGTCTATTTTAGTTCATTGATTCGTAAAATGTCGATGTTAACTCTTACCATATCCTGTTTGACCAATTCCAGTTTGCCTTGATTCATGGACCTAACATTCCAGGTTCCTATGCAATATTGCTCTTTACAGCATTGGACTTTACTTCCATCACCAGTCACATCCACAAATGGGTGTTGTTTTGCTTTGGCTCCGTCTCTTCATTCTTTCTGGAGTTATTTCTCCACTAACACATTCAAGTATGACCTAAATCAAATCCCTTACGATTATACAGTGGAAGTGAGAAATAGATTCAAGGGATTAGATCTGATAGAGTGCCTGATGAACTATGGATGGAGCTTCGTGACATAGTACAGGAGACAGGGATCAAGACCATCCCCAAGAAAAAGAAATGCAAAAAGGCAAAATGGTTGTCTGAGGAGGACTTACAAATAGCTGTGAAAAGAAGAGACATGAAAAGCAAAGGAGAAATGGAAAGATATACCTATTTGAATGCAGAGTTTCAAAGAATAGCAAGGAGAGAAAAGAAAGCCTTCCTCAGTGACCAGTGGGGAAAAACAGAGGAAAACAATAAAATGGGAAAGACTAGAGATCTCTTCAAGAAAATTAGAGACACCAAGGGAACGTTTCATGCAAAGATGGGCACAATAAAGGACAGAAATGGTATGGACCTAACAGAAGCAGAAGATATTAAGAAGAGGTGGCAAGAATACACAGAAGAACTATACAAAAAAGATATTCATGTCCCAGATAACCACGATGGTGTGATCACTCACCTAGAGCCAGACATCCTGGAATGTGAAGACAAGTGGGCCTTAGGAAGCATCACTAGGAACTAGTGGAGGTGATGGAATTCCAGTTGAGCTATTTAGAATCCTAAAAGATGATGCTGTGAAAATGCTGCACTCAATATACCAGCAAATTTGGAAAAGTCAGCAGTGGCCACAGGAATGGAAAAAGTCAGTTTTCATTCCAATCCCAAAGAAAGGCAAAGCCAAAGAATGCTCAAACTACCACACAATTGCACTCATCTCACATGCTAGTAAAGTAATGCTCAAAATTCTCCAAGCCAGACTTTAACAATATGTGAACTGTGAGTTTTCAGATGTTCAAGCTGGTTTTAGAAAAGGCAGAGGAACCAGAGATCAAATTGTCAATATCTGCTGGATGATTGAAAAAGCAAGAGAGTTCAAGAAAAACATCTATTTCTGCTTTATTGACTATGCCAAAGCCTTTGACTGTGTGGATCACAATAAACTGTGGAAAATTCTGAGAGAGATGGAAATACCAGACCACCTAACCTGCCTCTTGAGAAATCTGTATGCAGGTCAGGAAGCAACAGAACTGGACATGGAACAACAGACTGGTTCCAAATAGGAAAAGGAGTGCGTCAAGGCTGTATACTGTCACCCTGCTTATTTAACTTATATGCAGAGTACATCATGAGAAATGCTGGGTTGGAGGAAGCACAAGCTGGAATCAAGAATGCCAGGAGAAATACCAATAACCTCAGATACACAGGTGACACCACCCTTATGGCAGAAAGCAAAGGACTAAAGAGCCTCTTGATGAAAGTGAAAGAGGAGAGTGAAAAAGTTGGCTTAAAGCTCAACATTCAGAAACTAAGTTCACAGCATCTGGTCCCATTACTTCAAGGCAAATAGATGGGGAAACAGTGGCAGACTTTATTGTTTTGGGCTCCAAAACCACTCCAGAATGGTGTTTACAGCCATGAAATTAAAAGACGCTTACTCCTTGGCAGGAAAGTTGTGACCAATCTAGTCAGCATATTAAAAAGCAGAGATATTACTTTGCCAACAAAGGACCATCTAGTCAAGGCTATGGTTTTTCCAGTAGTCATGTATGGATGTGAGAGGTGGACTATAAAGCTGAGCGCCAAAGAATTGATGTTTTTGAACTGTGGTGATGGTGAAGACTCTTGAGAGTTCCTTAGACTGCAAGGATATCCAGCCAGTCCTTTCTAAAGGAGATCAGTCCTGAGTATTCATTGGAAGGACTGATTCTGAAACTGAAACTCCAGTACTTTGGCCACCTGATGGGAAGTGCTGACTCATTTGAAAGGACCCTAATGCTGGGAAAGATTGAAGGCAGGAGGAGAAGGGGATGACAGAGGATGAGATGGTTGGATGGCATCACCAACTCAATGGACATGAGTTTAGATAAACTCCGGGAGTTGGTGATGGACAGGGAGGCCTGGCCTGCTGTAGTCCATGGGGTCGCAAAGAGTCAGATACGACTGAGCGACTGAACTGAATTGATCTCCCGTAGCATATTGGGCACCTGCACACCTGGGGAGTTCATCTTTTAGTGTCCTATCCTTTTGCCTTTTCATGCTGTTCATGGGGTTCTCAAGGCAAGAAGAATGCTGAAGTGGTTTGCCATTCCATTTTCCAGTGGACCTTGGTTTGTCAGAACTCTCCACCATGACCCACCCGTTTGGGTGGCCCTACATGGCATGGCTCATAGTCATTGAGTTAGACAAGGCTGGGGTCCATGTGATCAGTTTGGTTAATTTTCTGTGATTGTGGTTTTCATTCTATCTGCCCTCTGATGGATAAGGATAAGAGGCTTATGGAAGCTTCTTGATGGGAGAGACTGACTGAGGGAGAGTCTGGGTCTTGTTTTGATGGGCAGGGCCATGCTCAGTAAATCTTTAATCCAGTTTTCTGTTGATGGGTAGAGCTGTGTTTCCTCCCTGTTGTTTGACCTGAGGCCAAACTATGGTGGAGGTAATGAAGATAATGGCAACCTCCTTCAAAAGGTCCCATGCACTTCTGCATTCAGTGCCCCTGACCCTTAAGCAGGCCACGGTCAACCCAAGCCTCCACCAGAGACTCCTGGACACTCCCAGGCAAGTCTGGGCCAGTCTCTTGTGGGGCCACTGCTCCTTTCTCCTGGGTCCTGGTGCATACAAGATTCTGTATGTGCCTGCCAAGAGTCTGTTTCCCCAGTCCTGTGTAAGTTCTGGAGGCACTATGGTGGGGTTAATGGCGACCTCCTCCAAGAGGGCTTATGCCATTCATACCCAGGTCTACTGCACCCAGAGCTCCTGCCCCTGTGGCTGGCCAGTGCTGGCCCGTACCTTCGCAGGAGACACTCATACACAGCTCTGGCTCAGTCTCAGTCTCTGTAGCATCTCTGGATCCTGGTGTGCACAAGGTGTGTTTGAGCCCTCTGAGTGTCTCTGGTGCATAAGGGGTTTGATTCTAAACACGATTTCACCCCTCCTACCCTCTTGCTGGGGCTTCTCCTTTGCCCTTGGACATGGGGTATCTTTTTTTGGTGGGATCCAACATTCTCCAGTCGACGGTTGTTCAGCAGTGAGTTGTAGTTTTGGAGTTCTCGCAGGAGAAGATGAGCACACACCCTTCTACTGTGCTATTTTACACCCCTGGAAAGAGTGTAATCCTAAAGAATTTCCAATCCCAAAGAAAAGCAATGCCAAAGAATGTTCAAACTACCACACAATTACAGTCATCTCACATGCTAGCAAAGTAATGCTCAAAATTCTCCAAGCCAGGCTTCAGCAGTACGTGAACCATGAACTTCCAGATGTTCAAGCTGGGTTTAGAAAAGGCAGAGGAACCAGAGATCAAATTGCCAACATCCATTGGATCATCGAAAAAGCAAGAGAGTTCCAGAAAAATAATCTATTTCTGCTTTATTGACTATGCCAAAGCCTTTGACTGTGTGGATCACAACAAACTGTGGAAAATTCTTCAAGAGATGGGAATACCAGACCACCTGACCTGCCTCCTGAGCAATCTGTATGCAGGTCGAGACGCAACAGTTAGAACTGGACACGGAACAACAGACTGTATATTGTAACCCTGCTTATTTAACTTATATGCAGAGTACATCACGTGTAACGCTGAGCTGGATGAAGCACAAGCTGGAATCAAGATTGCCAGGAGAAGTATCAGTAACCTCAGATATGCAGATGACACCATCCTTACGGCAGAAAGCGAAGAAGAACTAAAGAGCCTCTTAATGAAAGTGGAAGTGGAGAGTGAACTCAACATTCAGAAAACTAAGATCATGGCATCCAATTCCATGACTTTATGGCAAATAGATGGGGAAACAGTGGAAACAAAGAGAGTTTATAGTTTGGGCTCCAAAATCACTGCAGATGGTGACTGTAGCCATAAAATTAAAAGACACTTGCTCCTTGGAAGAAAAACTACGACCAATCTAGACAGCATGTTAAAAAGCAAAGACATCACTTTGCCAACAAAGGTCCATCTAGTCAAAGCTATGGTTTTTCCAGTAGTCATGTATGGATGTGAGAGTTGGACCGTAAAGAAAGCTGAGCACTGAAGAATTGATGCTTTTGAACTGTGGGGTTAGAGAAGACTCTTGAGAGTCCCTTTGACTGCAAGGAGATCAAACCAGTTAATCCTAAAGGAAATCAGTCCAGATTCTTTATTGGAAGGACTGATGCTGAAGCTGAAACTCCAATACTTTGGCCACCTGATGGGAAGAACTGACTCATTTGGAAAGACCCTGATTATGGGAAAGATTGAAGGCATGGGGAGAAGGGGATGACAGAGGATGAGATGGTTGGATGGCATCACTGACTTGATGGACATGAGTTTGAGTAAGCTCTGGGAGTTGGTGATGGACAGGGAGGCCTGGCATGCAGCAGTTCATGGAGTCGCAAAGAGTCAGACAGGACTGAGCGACTGAACTGAACTGTTTTTTGAAACTATAAATTTATAGTTTAGACTGTTTTTATCATGAAGAAATAATAAGTATTCAGCTTAAGATTTTCAAGGAAATAATAAGAGAAAAAACAGAAAATTAGATGTGGAGTTTTGTTGTTGTTGTGGCCACAGTGTGTAGCTTGTAGCATCTTAGTTCCTAACAAGGGATTGAACACAGGCAAACGACAGTGAAAGTGTGGATCAAATTGAACACTGAACTAACCACTAACCACTGAACCACCAGGGAATTCCCTAGATGTGTGATATTAAGATACATGTACACTAAACTCTATATACTCAGAACTGGGAAATCAGATCCACCATAAACCCACTGTTTGAATAGGAAAAAGTGGCCCCTTTTTGGTGGGTTTGGCCCATGCCTAGGCATACAGATTGGCCAGTGTAGGCTTATAATCAGGTTCCTGTGTACCGTCTTATATGTAATTATATGCATATGTTACAAACATGTATCCTATATGCATACATTTCCCTTGGGCTTGCTGTCATCTCAGTGCCTGTGCACTAGTTCTCTACCTGCAGTGATCTTTCCTTGGATATCTGCCTGACTCACTTCCATCCTCTATGCCTTTACTTATGTCACCTTCTCACTGAGTGTTTTCCTGACCACTCTTACGTCTCTTACCTTGCTAAAGAATTTGTTTGACTCTTCTCGGTAGTATGTAAGGTCCATGAGAAAGAGCCATCTTTGCCTCTTTTTTTACTGATATATATCCCTGGCACTTTAGCTCCAGAAATACATTCATGTTGAGTGAATAGTCATCTGGGAGTATGGGGAAGAAAAGAGAGTATGGAATATAAGATTGTTGCACAGCCTTAAAGACCCTCTTATGTATGGTTAACTTTATCATCAGTTCAGTTCAGTCCAGTCACTCAGTTGTGTCCGACTCTTTGCAACCCCATGAATCTCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCCGGAGTTTACTCAGACTCATGTCCATTGAGTCGGTGATGCCATCCAGCCATCTCATCCAATGTCTAAGTTCCAAATTTTGTGCAACAGCTGTTGCACAAAAGTTGTTGAAATGTGAATTATATAGGCACCTCAGGTAGACTAGAGAACATGACGTTTTTCATGATAGGTAGACCTATGTACCAATTACAAATGAAATTCCAAGTGAACTACATGTTACATAAATATATGTGCCGAGGATATTTTTTTTCTTGATAGTTGATTTAAAGGGAAGATATTCCATAGTACATAGAACAGCAGAGTGTTCTGTGGAGACTCTGAAATTTTAAGGCAAGTAATATTAGAAGTTTGAGTTTCATGTTTGTCTTTTTAGTTTGGGCTGCTATAACAAAAATATATAGAGGATGAGTGGCTTAAACAATAAACATTTATTGTCACAGATCTGGAGGCTAGGAAGTTCAAGATCAAGGTGCTAGCAGAACAGTGTCTAGAAAGAGCCTGCTTCCTATAGACTGTAGACTGCTGTCTTCTCCTGTATCCTCAAAAAACCAAGGGCCATCATCTCCACCCACATCCCTTCTTATAAGGGCACTGAGCTCATTCATGAGGGCTCATGACCTAATATGGCTTCCCTGGAGGCACAGTGGTAAAGAATCTGCCTGCCAGTGCAGGAGACACCAGTTCGATCCCTCAGTCAGGAAGACCCCCTGGAGAAGGAAATTACCCACTCCCATATTCTTGCTGGGAAAATCCCATGGGCAGTGAAGCCTGGCAGGCTACAGTCCATGGGGTCAAAAAGAGTCTGACATGACTTAGCAAATAAACAACAACAAACTCATTCATGAGGGCTCATGACCTAATTACTTCCCAAAGGCCCCACCACCTGATACCATCACACTGGGAACTGGCAGCACATTCAGTCCTTAGCACCTCCTTTTGGGTTGAGTATTTCCACTACCTCATTCAGGCCATCCTTGCCTCTGCCAGTTATATTATCATGTTACATATGCCTTTCATGGGAGTAATTTGCATTCTAAAATCTAGTCTCTCAAAGCAGAAAATTTCTAATTCTAGAAAGATGATTTTTCAAGTATGTGTTTAGTCCAGAATAAAAAGTTGCCAACAGAACACACAGTCATTTGTCTTTTGTAATAAGCTTGTAGTAGAAGTTCAATAATAAAGTCATCCATGCTTACTTCACCCAGGTTCAATTACACAACATAGTTCAGTTTCTTGTGATGGAGATTATAGGTCTTTTCTGCCTGTCCTCAGGGAAGTATAGATAAGTGTATCGGTTTATAGTATTCCATGGCTACTGAGGAGTAAAGAATAGGGCTTGACTGCTGGGTCTAGTTTTAGTTTTATAGAAAATTTGAAGAAGAATGAATAACCATCTTCCCCAACCCCACTCTGCCACCATAGCATTTTTAACTGTTAGATACAGGGATGTAGGACTAATAAAATTTTTTAATAGTTTTATAAAAAGATAATTGGGAGAAAAATTACTAACCATCCCTTTTATTTTATTTTTTTTAGGCTTACTGAATTCCAG
Seq C2 exon
ATATGGCCGAGGATGGGTTGATCACAGAAAATTAGCTGTAAATAGCTTTCGCTGTTTTGGATATGGCCAGAAATCTTTTGAATCTAAAATCTTAGAAGAAACCAAATTTTTCATTGATGCTGTTGAAACATACAATGGTAGCCCTTTTGACTTAAAACAATTAGTAACAAATGCTGTTTCAAACATAACCAATCTGGTCATTTTTGGAGAACGATTCACTTATGAAGACACTGATTTTCAGCACATGATTGAGTTATTTAGTGAAAATGTGGAACTAGCTGCCAGCGCCACAGTCTTCCTCTATAATGCCTTTCCATGGATTGGCATCTTACCTTTTGGAAAACATCAACAACTGTTTAGAAATGCAGCCGTGGTCTATGACTTTCTGTCTAGGCTTATTGAAAAAGCTTCCATCAACAGAAAACCTCAGTTACCTCAGCATTTTGTTGATGCTTATTTAGATGAGATGGAAAGAAGTAAAAATGACCCATCATCTACTTTCTCCAAAGAAAACTTAATTTTCTCTGTGGGTGAACTCATCATTGCTGGAACTGAAACTACAACTAATGTGCTGCGGTGGGCAGTTCTTTTCATGGCCCTTTATCCTAACATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010419:ENSBTAT00000039972:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(0.9=100)
A:
NA
C2:
PF0006717=p450=FE(45.0=100)
Main Inclusion Isoform:
ENSBTAT00000013747fB2007
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development