DreINT0054286 @ danRer10
Intron Retention
Gene
ENSDARG00000056587 | cyp2r1
Description
cytochrome P450, family 2, subfamily R, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-110114-1]
Coordinates
chr7:27421937-27424555:+
Coord C1 exon
chr7:27421937-27422078
Coord A exon
chr7:27422079-27423925
Coord C2 exon
chr7:27423926-27424555
Length
1847 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
ATTGTTTATTCTCTGTCTAGGAC
3' ss Score
9.3
Exon sequences
Seq C1 exon
ATTTTCAGTCTAGACCTGGGAGGAATCCCGACTGTGATTCTAAATGGTTATGATGCCATTAAAGAGTGCCTGTATCACCAAAGTGAGGTTTTTGCAGACCGCCCGTCCCTCCCTTTATTCCAGAAGATGACAAAAATGGGAG
Seq A exon
GTAAGTGGTTCCTTATGGAATAATTTATTTTGGAAAGACTTCCTGGAATAGATGACTGCAGATTGAGCTAGATACATTGTTCTCCATGAAATAAAAAGCTGACATTATTTTCTGTCCCCTTATGCCTTTACCAAAGGCAAGTCTAAAATAAAACAAATAACTAGCTTAGGTTACCTCATGTACTTCATTCCAAAACCTCTAAAGCCACAGGATAACTTTCTGTGAGAAACAGTCCACATTCAATCATTATTCACTGATAATGAAGATAAGCTGCAGCACAGTTTAGGATTAGCAGTGCACTAAATTGTCTACAGTGCTCAGCGTAATTGAATACACCCCATTTTAAAAATGAATATTTGTATTAATTTCTCAGTGAATATAGGTGCATTTAAACAAAACAGATTTTTAAAACAGATATATTTATTCAACTAATATTTAAGTCACCAAACATATGAAGAATTTAGATGCAAAAACTTCTAAATGCAATCTAAAATTTTCCTCTAAAATGAGCGTTTTTTATCAGGCTCCTGTGTTTATGTTCAGTAATATGATTTTAATGCCAAAGAATAAGTCCTTTTCCTGGTTTTTAAAGTGTAATATCTCAACATGAACAAAGGGGGCTGAGAAAAATGTTCTTTTTTAATGAAAATTTTAGATAGGACTTTTGCATTTAAACTCTTCATATTTAGAAATTGAAAGATAAACCAATTCAATTCAAGCAAAATATTTTGCATAAAAATTACAACCTACAAAATTTCAACAAAATTTTTTGTTTGCTTCTCTACGTTTTTCCTCTTTTTTAAATATTTAATATTTTTCTATAATATATAAATTTGGGTGTACTAGTTTTTAGACCATTATCTTAAGTTATTTTGTTAGATAAGCTCCAGATTTGGCTTCAGTACTGACTAATCTAATGTATGCACAAATATAATAGTGTATAGCTTCCTATAAAAAAATATGAATTTAAAAGAGAGATTTGTGAGGGGTGTACTCATACAGTATATGCTGATTTAATAAAATTTAATACATTTAAATTAAATATATATTTGAGGAACCCGGTTGCAACAAACCATTTAAGTTCAAAAAGTAATCTTAATGAGTACTGTGAACTTAATCCATTTGAGTAAATGAAGCAATTTGAGCACAGTAAAACCCAATAATTGAAGAGAACTCAAACCAACTGAGTACTGTAAAACCCAATAAGTCAAGGCAACTCAAACCATTTGAGTTAAAAAAAAAACAACTACTCTACAGTATATGAGTACTGTGAACTTTCTCCATTTAAGTTGTAGTATGAGGTATTTAATCAACTGTTTTCAAATGAGTAGAATTAACTTTCAGCAAATTTGAGTTAACTAAACTCATTTCATTTGATAGTTAACTGTTGGGTTTATAGTGTAGAGATTTGAACAAAATTAGTTTCCATGTTAATAAAAAAACTACTCTTTTAATCATCTGTGTAAAAAAGAGGCTCTGGCACGGCAATGTATGTCAGAGTTGAGGCAAAAACTAGAGAAGAGCGGACAGTCACATTTAAGGTTATCTCATAATCACTATCACAGTTCTTGTTATCTCTGTTTAACCCATGAGACAATTGCTGTTTGACCAGTCATCCCTGATCGAATGTACTGAAAGTTTATCATTAGATTTCCATTTTTAAACCAACCTCTGTCAGTCGCACAAAAGGTTATCACATAACCAGTATTGCAGTTCTTGTAATCTCTTTTTAACCCAGGAGACTATTACTGTTTGACTAATAATCTCTGGTTAAACATACATGAAGTTTATCGCTAGATTTCCATTTTTAAATAGACCTCTCTCGGTATTGTTTATTCTCTGTCTAG
Seq C2 exon
GACTTCTGAACTGCAAATACGGCCGAGGCTGGATTGAGCACCACAAACTGGCTGTGAACTGCTTCCGCTACTTTGGCACTGGCCAGCGGATGTTTGAGAGGATTTCTGAAGAGTGCCTATATTTTCTTGATGCCATTGACCAGCACCAAGGCAAGCCCTTTAACCCCAAGCATCTGGTGACCAATGCGGTGTCCAATATCACCAACCTCATCATCTTTGGCCAGCGCTTCACCTATGACGATGGGGATTTTCAGCACATGATTGAGATCTTCAGTGAGAATGTGGAGCTGGCAGCCAGCAGTTGGGCTTTCCTGTACAACGCCTTCCCCTGGATGGAGTACCTGCCCTTTGGGAAGCACCAGAGGCTGTTCCGCAATGCCAACGAGGTCTATAAGTTCCTCCTGCAAATCATCAGGCGCTTCTCGCAGGGCAGGGTTCCCCAGTCGCCGCAACATTACATTGATGCCTACTTGGACGAAATGGAGCAAAGCACCCCTGATAAAGCCACTTCTTTCTCTCAAGACAATCTGATTTTCTCAGTTGGAGAACTGATCATCGCGGGCACAGAAACCACCACTAATTGTCTGCGCTGGGCTATGCTCTACATGGCTCTGTATCCCAGGATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056587:ENSDART00000079091:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.4=100)
A:
NA
C2:
PF0006717=p450=PD(71.9=98.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGAATCCCGACTGTGAT
R:
GCTGGCCAAAGATGATGAGGT
Band lengths:
350-2197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]