MmuINT0045102 @ mm9
Intron Retention
Gene
ENSMUSG00000030670 | Cyp2r1
Description
cytochrome P450, family 2, subfamily r, polypeptide 1 [Source:MGI Symbol;Acc:MGI:2449771]
Coordinates
chr7:121696235-121698246:-
Coord C1 exon
chr7:121698105-121698246
Coord A exon
chr7:121696868-121698104
Coord C2 exon
chr7:121696235-121696867
Length
1237 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
TTTTAATACGTTTCTTTTAGGCT
3' ss Score
7.9
Exon sequences
Seq C1 exon
ATTTTCAGTTTAGATCTTGGAGGCATATCAACTGTCGTTCTAAATGGCTATGATGTAGTAAAGGAATGCCTTGTTCATCAAAGTGAAATTTTTGCAGATAGACCATGCCTTCCTTTGTTCATGAAGATGACAAAAATGGGAG
Seq A exon
GTATGTTTATTTTCCACTATTCAGTGAGACTATTTTAGGTCACATTCCTTATTTTAAATCATCTTAGTATAGACAGATGATTATTTTGTACTTTGTGAAACCTGGATTTAAGGAGCCATCAGACTGCATTCAATAATGTTTTAGACCACTGCATGCTAGTTTTATTGCTATTCAGTTCTAAGAAACGTAAGTAATTTTTCAAGAATTAGTGCTTGATATGTACTCAAACAGTTCAGGGGTGCACATACACACACACATACACACACCATGAGTCAGAAGTTTTCCTTTTGATAACAATCTTGAGGACTTAATGACTGACTAGCATGTCCAGTCTTACAGAAACTAAACAGACTTTCTTAGCTACTCATCACTATGCTGTATAAATGGTAAGCTGTAGAATTTATACAAAGGATGGGCATTTTATAGGGTTTAATAATGATCAGATTTTTATGACTACATATTCAACAAGGGAGAAATGCTTAAAGTTGACAAAATCAAGGAGAAAGCAGCAGCAGTAAAGTATTTCAAAGTAGAATATTGATACCAGGAAGAACTGGAGTCTGATTTTTTTTTTAAACTAATGGTGTTCTGAATTCTTTAATGGACCTCCACATTTACTTTCAAAGAAGAACTTAGTATCTTGTTTAAATAATCTAAACAGCAAGTAATAATAACATTAGCAAAATTTGAATTCATGATTTTTTTTTTAATTACATGAACATTTCTACTACTTTGACAAGGCTACTCTTACCTTTGGCATTGTTAGGTATCATATGCCTTTAACAGAAAGAAACTTGAACTGTAAAAATCTAGTTTCTTTCAGACAGTAACTTCTGGTTTGGGAACATATGCTTAGTCCAAAATTAAATTTTACCATAGGACATAAAACCATTTGTCTTTTATAACTTATGTCTATGAGAAAAGTTGAGTGATAGATTTATGAAAGCCATAGTTCATCTGTGTTCAATTACATAAGACTAGACAGTTTATTGTGGTAAAAGAATGAGAATTATAGGTCTTTTCTGCCAGTCCTTTCTTGAGGAATAGAGACCCGCTTTATCTAATGTTCTGTGGCTTTTGAGTATCACCAACTAGGACCCAATCATGTACTTAGATAATTGGGGGGTAAAATCACTGACTACCCATCTTTGAATTTCTCCTTTCTGTTTTTTATTCCACAACATCTTAAGTACAGAGAAGTATGGATTACACAATATTTTTAATACGTTTCTTTTAG
Seq C2 exon
GCTTACTCAATTCCAGATATGGTAGAGGATGGATTGATCACAGAAGGTTGGCTGTTAACAGCTTTCATTATTTTGGAAGTGGCCAAAAATCTTTTGAATCTAAAATTTTAGAAGAAACTTGGTCTTTAATTGATGCTATTGAAACATACAAAGGTGGACCTTTTGACCTCAAGCAACTGATAACAAATGCTGTTTCAAACATAACTAACCTTATCCTTTTTGGAGAACGATTCACTTATGAAGACACTGATTTTCAGCACATGATTGAATTATTTAGTGAGAATGTGGAACTAGCTGCCAGTGCTCCAGTCTTCCTTTATAATGCATTTCCATGGATTGGCATCTTACCTTTTGGGAAACATCAAAGACTATTTAGAAATGCAGATGTGGTCTATGATTTCCTCTCCAGACTTATTGAAAAAGCTGCAGTCAATAGAAAGCCTCATTTACCTCACCATTTTGTTGATGCCTATTTAGATGAGATGGATCAAGGTCAAAATGATCCTTTATCTACATTTTCCAAAGAGAATCTAATTTTTTCAGTGGGTGAACTCATCATTGCTGGAACTGAAACTACAACCAATGTGCTCCGCTGGGCAATTCTTTTCATGGCCCTTTATCCTAATATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030670-Cyp2r1:NM_177382:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(55.3=100),PF0006717=p450=PU(6.8=25.0)
A:
NA
C2:
PF0006717=p450=FE(46.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGATAGACCATGCCTTCC
R:
CACTGGCAGCTAGTTCCACAT
Band lengths:
353-1590
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: