MmuINT0045102 @ mm10
Intron Retention
Gene
ENSMUSG00000030670 | Cyp2r1
Description
cytochrome P450, family 2, subfamily r, polypeptide 1 [Source:MGI Symbol;Acc:MGI:2449771]
Coordinates
chr7:114552721-114554732:-
Coord C1 exon
chr7:114554591-114554732
Coord A exon
chr7:114553354-114554590
Coord C2 exon
chr7:114552721-114553353
Length
1237 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
TTTTAATACGTTTCTTTTAGGCT
3' ss Score
7.9
Exon sequences
Seq C1 exon
ATTTTCAGTTTAGATCTTGGAGGCATATCAACTGTCGTTCTAAATGGCTATGATGTAGTAAAGGAATGCCTTGTTCATCAAAGTGAAATTTTTGCAGATAGACCATGCCTTCCTTTGTTCATGAAGATGACAAAAATGGGAG
Seq A exon
GTATGTTTATTTTCCACTATTCAGTGAGACTATTTTAGGTCACATTCCTTATTTTAAATCATCTTAGTATAGACAGATGATTATTTTGTACTTTGTGAAACCTGGATTTAAGGAGCCATCAGACTGCATTCAATAATGTTTTAGACCACTGCATGCTAGTTTTATTGCTATTCAGTTCTAAGAAACGTAAGTAATTTTTCAAGAATTAGTGCTTGATATGTACTCAAACAGTTCAGGGGTGCACATACACACACACATACACACACCATGAGTCAGAAGTTTTCCTTTTGATAACAATCTTGAGGACTTAATGACTGACTAGCATGTCCAGTCTTACAGAAACTAAACAGACTTTCTTAGCTACTCATCACTATGCTGTATAAATGGTAAGCTGTAGAATTTATACAAAGGATGGGCATTTTATAGGGTTTAATAATGATCAGATTTTTATGACTACATATTCAACAAGGGAGAAATGCTTAAAGTTGACAAAATCAAGGAGAAAGCAGCAGCAGTAAAGTATTTCAAAGTAGAATATTGATACCAGGAAGAACTGGAGTCTGATTTTTTTTTTAAACTAATGGTGTTCTGAATTCTTTAATGGACCTCCACATTTACTTTCAAAGAAGAACTTAGTATCTTGTTTAAATAATCTAAACAGCAAGTAATAATAACATTAGCAAAATTTGAATTCATGATTTTTTTTTTAATTACATGAACATTTCTACTACTTTGACAAGGCTACTCTTACCTTTGGCATTGTTAGGTATCATATGCCTTTAACAGAAAGAAACTTGAACTGTAAAAATCTAGTTTCTTTCAGACAGTAACTTCTGGTTTGGGAACATATGCTTAGTCCAAAATTAAATTTTACCATAGGACATAAAACCATTTGTCTTTTATAACTTATGTCTATGAGAAAAGTTGAGTGATAGATTTATGAAAGCCATAGTTCATCTGTGTTCAATTACATAAGACTAGACAGTTTATTGTGGTAAAAGAATGAGAATTATAGGTCTTTTCTGCCAGTCCTTTCTTGAGGAATAGAGACCCGCTTTATCTAATGTTCTGTGGCTTTTGAGTATCACCAACTAGGACCCAATCATGTACTTAGATAATTGGGGGGTAAAATCACTGACTACCCATCTTTGAATTTCTCCTTTCTGTTTTTTATTCCACAACATCTTAAGTACAGAGAAGTATGGATTACACAATATTTTTAATACGTTTCTTTTAG
Seq C2 exon
GCTTACTCAATTCCAGATATGGTAGAGGATGGATTGATCACAGAAGGTTGGCTGTTAACAGCTTTCATTATTTTGGAAGTGGCCAAAAATCTTTTGAATCTAAAATTTTAGAAGAAACTTGGTCTTTAATTGATGCTATTGAAACATACAAAGGTGGACCTTTTGACCTCAAGCAACTGATAACAAATGCTGTTTCAAACATAACTAACCTTATCCTTTTTGGAGAACGATTCACTTATGAAGACACTGATTTTCAGCACATGATTGAATTATTTAGTGAGAATGTGGAACTAGCTGCCAGTGCTCCAGTCTTCCTTTATAATGCATTTCCATGGATTGGCATCTTACCTTTTGGGAAACATCAAAGACTATTTAGAAATGCAGATGTGGTCTATGATTTCCTCTCCAGACTTATTGAAAAAGCTGCAGTCAATAGAAAGCCTCATTTACCTCACCATTTTGTTGATGCCTATTTAGATGAGATGGATCAAGGTCAAAATGATCCTTTATCTACATTTTCCAAAGAGAATCTAATTTTTTCAGTGGGTGAACTCATCATTGCTGGAACTGAAACTACAACCAATGTGCTCCGCTGGGCAATTCTTTTCATGGCCCTTTATCCTAATATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030670:ENSMUST00000032908:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(55.3=100),PF0006717=p450=PU(6.8=25.0)
A:
NA
C2:
PF0006717=p450=PU(42.9=99.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGATAGACCATGCCTTCC
R:
CACTGGCAGCTAGTTCCACAT
Band lengths:
353-1590
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types