BtaINT0046208 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010419 | CYP2R1
Description
Bos taurus cytochrome P450, family 2, subfamily R, polypeptide 1 (CYP2R1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076267]
Coordinates
chr15:38441831-38445583:+
Coord C1 exon
chr15:38441831-38442160
Coord A exon
chr15:38442161-38444431
Coord C2 exon
chr15:38444432-38445583
Length
2271 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TATGCCTGCTTTCTGTTTAGGGA
3' ss Score
10.3
Exon sequences
Seq C1 exon
GACAAGTTCAGAAAGAGATTGACTTGATTATAGGACCCAGTGGGAAGCCTTCTTGGGATGAAAAGTGCAAAATGCCTTATACCGAGGCAGTTTTGCATGAAGTTTTAAGGTTCTGTAACATAGTGCCATTGGGGATTTTCCATGCAACCTCTGAGGATGCAGTTGTACGTGGTTATTCCATTCCTAAAGGCACAACAGTAATCACAAATCTTTATTCTGTACACTTTGATGAAAAGTATTGGAGAGACCCAGAAATATTCTATCCAGAGCGATTTTTGGACAGCAGTGGACATTTTGCCAAGAAGGAAGCTTTGATTCCCTTTTCCCTAG
Seq A exon
GTAAGAGAGCTTTTTCACAGGGGCTTAACTTTAGAACAAAGTATAGTGATGATTAATTATGTGTAACATCTTAATCTGAAGCATTTTGTTGCAGAATTAATATCCCAACTCTGAAAACAGCATTGACTCTTATAGGAGAGAATGGTTTAATTAGATGTCATTAACACCTGTTTTTACTCAAAATAAACAAGGCATAATTTAGCAGCTAGAAAGTAACTGATGAGAAGCTCTGGCTTTTATTGAAAATCTCTTGCTTGTGAATTTTGACTTGTAATCAAAAATTTGTAGAGCTGGAAGTCAGTAACAGGCACCTTGAGAAACTGAGACCCAGGGACAGGAATGGCATCATAATTTAAAGTGAAACTGGAATCTAGCTCTCCTGATTTTTAATTATTATACCTTATCTCCAAAAATATTGCATCTCCTGAGAAAAAGTACATAGATCACAAGACCCATGGAAGATGGCTTGGAGAAATCTTTTCATTGGGGAAGGGTACACATACAGTCATTTGAAATGAAATGAACTTCTCCCGGGTCAATAGAACTAAGTGTTACACCTTAGATCTTTCATGGCATATCTCAGGCTCCGTTGCAAAGGAAGCAGAGACTGGAACTAATGAGCTTACAAAAGTACATGACCTGACAAAAGAAGGTAAAAAATGGGCCCTGGGAACTGAAATGCTAGGGCCCATTTCTATTCTTTGGAGCTTAAGAAAATCCTTTAATAAACATAACTTCCTCTCAGTTCAGTCGCTCAGTCATGTCCAACTCTGCGACCCCATGGACCACAGCACACCAGGCCTCTGTGTCCATCACCAACTCCTGGAGTTTACCCAGACTCATGTCCATTGAGTCAGTGATGCCATCCAACCATCTCATCCTCTGTCATCGCCTTCTCCTCCCGCTTTCAATCTTTCCCAGCATCAGGGTCTTTTTCAATGAGTCAGCTCTTCCCATCAGGTGCCCCAAATACTGGAGTTTCAGCTTCAACATCAGTCCTTCTAATGGACACTCAGGACTAATCTCCTTTAGGATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAGTACCACAGTTCAAAACCATCAATTCTTCCTTTGGCCCTCAGCTTTCTTTGTAGTCCAACTCTCACATCCATGCACGACTATTGGAAAAACTGTAGCTTTGATTAGACAGACGTTTGTTGGCAAAGTGATGTCTCTGCTTTTTAATATACTGTCTAGGCTGGTCATAACTTTCTTGCCAAGGAGTAAGCGTCTTTTAATATCATGGCTGCAGTCACCATCTACAGTGATTTTGGAGCCCCCAAAAACAAAGTCAGCCGCTGTTTCCACTGTTTCCCCATCTACTTGCCGTGAAGTGATGGGACCAGATGCCATGATCTTCGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTACTCTCCTCTTTCACTTTCATCAAAAAGCTCTTTAGTTCTTTGCTTTCTGCCATAAAGGTGGTATCATCTGAATATCTGAGGTTATTGATATTTCTCCCGGCAGTCTTGATTCCAGCTTGTGCTTCATCCAGCCGAGTGTTTCTCATGATGTGCTCTGCATATAAGCTAAATAAACAGGGTGACAATATACAGCCTTGACGTACTCCTTTTCCTATTTGGAACCAGTCTGTTGTTCCATGTCCAGTTCTAACTGTTGCTTCCTGATCTGCATACAGATTTCTCAAGAGGCAGGTCAGGTGATCTGGTATTCCCATCTCTCTCAGAATATTCTCCAGTTTGTTGTGATCCACACAGTCAAAGGCTTTGGCATAGTCAATAAAGCAGAAATAGATGTTTTTCTGGAACTCTCTTGCTTTTTTGATGATGTAGCAGATATTGGCACTTTGATCTCTGGTTCCTCTGCCTTTTCTAAAACCAGCTTGAACGTCTGGAAGTTCACAGTTCACATATTGCTGAAGCCTGGCTTGGAGAATTTTGAGCATTACTTTACTAGCTTCTGAGATGAGTGCAGTTGTGCGGTAGTTTGAGCAGAGTTTTCCAAATTTGCTGACATGTTGAGTGCAGCACTTTCACAGCATCATCTTTTAGGATTTGAAATAGCTCAACTGGAAGCTCCATCACCTCCACTAGCTTTGTTCCTAGTGATGCTTCCTAAGGCCCACTTAACTTCCTCTAACATTCTTTAAATACCAGAGTTCCTGAAAGATATGTATTAAACATAAGTTTTGGTAAATAATTTTAAAAAACCATTATGCCTGCTTTCTGTTTAG
Seq C2 exon
GGAGAAGACATTGTCTTGGAGAACAGCTGGCTCGGATGGAAATGTTCCTGTTTTTCACAGCATTGCTTCAGAGGTTTCATTTGCATTTTCCACATGAACTGGTTCCAAATCTGAAGCCCAGGTTAGGCATGACATTGCAACCCCAGCCCTACCTCATCTGTGCAGAAAGACGCTGAAAGTACACAGATGTTTTGTGGAACAAGTTGTTTGCCTCACCCCCAAACCTTATTTAATTCCTGTGTTTGGACAGGAATCACAGCATCATAAAACCAAATGAACAGAGATGTTTCTTTAAAAACATCTACCATAATAATATGCATTAGTGTTAGTCGCTCAGTCGTGCCCAACTCTTTGCCACCCCATGGACTGTAGCCCACCAGGCTCCTCTGTCCGTGAGATTTTCCAGGCAAGGATACTGTAGTGGGTTGCCATTTCCTTCTCCAGGGGATCTTCCCAACCCAGGGATCAAACCTGGGTCTCCTGCACTGCAGGCAAATTCATTACCGACTGAGCTACAAGAGAAGCTCAATAATATGCCTTAGCCATTGTTTTTTCCTTATAAGTCTTATGACTTATAAGGTGGAATTATCTGAGGAAAACAGAGGTGCAGTCTATTCTGATTTGCTTCAAATAGCTGCCAGTGCCAGCTCCTTTCTAATCAGGTATTGTCATTAGTAGATTGTGTTACCACACAATCCAGTCCAGTTTCATAGTGGACTAAAGAAATTAGAACCCAAATAAGTGAGTTTGGACTACAGAGGTATTTTATTAGACTCAGTGATAGATGACAGAATATATATTATACAGTATATTTAATATAAAACCTGCTAATACTTTCAAGTCTTACTTCGTACTATAGTTTCATAAGAGTTGTATCATTTTTCCTACATATGAGGGTCCCTATGATATATAATAATGATATGATATTGATAATGATATATAATAATGTATTTAAAAATGACAGGTAGCATGACCTAGATGCTTCATGGTGTAATAAAGATCCTGTTTCTTCATATCCCTCAAGTTTGCTTTCCAGATGATACTAGCTTTATCTTAAGGCTGGCTTATGGAAGTACATGTTCTTTGCCCATGTCCTTTCAAGATATTGAGCTTGGATTGTTTTTGGGAGAGTAAAGGAGCTTTTCAGATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010419:ENSBTAT00000039972:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(1.2=0.9),PF0006717=p450=FE(62.1=100)
A:
NA
C2:
PF0006717=p450=PD(30.5=91.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development