HsaINT0044322 @ hg19
Intron Retention
Gene
ENSG00000186104 | CYP2R1
Description
cytochrome P450, family 2, subfamily R, polypeptide 1 [Source:HGNC Symbol;Acc:20580]
Coordinates
chr11:14899556-14900989:-
Coord C1 exon
chr11:14900660-14900989
Coord A exon
chr11:14899844-14900659
Coord C2 exon
chr11:14899556-14899843
Length
816 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TATCTGCTTTTTCTGTTTAGGAA
3' ss Score
10.64
Exon sequences
Seq C1 exon
GACAAGTTCAGAAAGAGATTGATTTAATTATGGGCCCTAATGGGAAGCCTTCTTGGGACGACAAATGCAAAATGCCTTATACTGAGGCAGTTTTGCATGAAGTTTTAAGATTCTGTAATATAGTTCCATTAGGGATTTTCCATGCAACCTCTGAAGATGCAGTTGTACGTGGTTATTCCATTCCTAAAGGCACAACAGTAATTACAAATCTTTATTCTGTACACTTTGATGAAAAGTACTGGAGAGACCCAGAAGTGTTCCATCCTGAGCGATTTCTGGACAGCAGTGGATATTTTGCCAAGAAGGAAGCTTTGGTTCCTTTTTCCCTAG
Seq A exon
GTAAGAGAACTTTCACGGGGCGTAACTTTAGAATAAAGGATAATGATAATTCATTAGATACAGCATCTTAATCTGAAGCATCCTTCTATAGAATTAAATATCCCAATTCTAAAAACACAGAACTGATTCTAACAGGAGAGAATGATTAAATTGGAAGTAATTAACATCTGTTTCGGCTTAATATAAGCCTTAATTTATTAACTATAGATGAACTTTTGAGAACCCCTGGCTTCTTCTAAATCTGTTTTTCAAAACTTGTGGAATGAGAATTCAGTAACAGGTAGCTTGAGAAACTGAGACCCAGAGAGGGAAAAGATATAGTCACTTAAGTAAAACTAGAATCTCACTCTCTTGGCTTCTGGTTATTGTACTTCATCTTCAATTAGGAAAATATTGCTTCTTCTGTGAAAAGGTACACAAGACCCATGGAAGATGGACTAGAAACTCTTCCCCTTCACTGGAGAAGAATACACACTTAGTTGAAATGAAGTGGACTGTTCTTGAGCAAAATGTCTCACCTCAAATTAGATCTTTTGTGGCATATCTTAGGCTCTGTTGCAGCATAGGAGGGAAGTGGGAGATGGAACTAAAGTCTTACAAAAGTCCGTGGTCTAACAAAAGGAGGTAAATGAATGGGTTCTGCTTGCTGAAGTGTCAATTTCTATTCTTTGAGATTTAAGAAAATCCTTTAATAAACATAGTTCCCTCTTTCTTTGTTTAAATTCCAGATTTCCTGAATGACATCCAAATATTAGACATTAATTTTGGTAAAGATTGTGGGTTTAAAAAATTATTGTATCTGCTTTTTCTGTTTAG
Seq C2 exon
GAAGAAGACATTGTCTTGGAGAACACTTGGCTCGGATGGAAATGTTCTTGTTTTTTACAGCATTGCTTCAGAGGTTTCATTTGCATTTTCCACATGAACTAGTTCCAGATCTGAAGCCCAGGTTAGGCATGACATTGCAGCCCCAACCCTACCTCATCTGTGCTGAAAGACGCTGAAACTGCCTGGGATGTTTTCGGGAACAAGAATGTATATTTGCCTTATCCCTGAACTTGGTTTAATCAAATCAATGTGTGTATTAGAATAAAAGTCACAGCATCAAAAAGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186104-CYP2R1:NM_024514:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(24.0=100)
A:
NA
C2:
PF0006717=p450=PD(11.8=91.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATGCAACCTCTGAAGATGC
R:
ACAGATGAGGTAGGGTTGGGG
Band lengths:
353-1169
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)