DreINT0054288 @ danRer10
Intron Retention
Gene
ENSDARG00000056587 | cyp2r1
Description
cytochrome P450, family 2, subfamily R, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-110114-1]
Coordinates
chr7:27424654-27426041:+
Coord C1 exon
chr7:27424654-27424980
Coord A exon
chr7:27424981-27425063
Coord C2 exon
chr7:27425064-27426041
Length
83 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAA
5' ss Score
6.02
3' ss Seq
TATGTTCTGGTGTCCTTTAGGTA
3' ss Score
11.16
Exon sequences
Seq C1 exon
AAAAGGTCCAAATGGAGATCGATAGTGTTCTGAATGGCAGACAGCCTGCTTTTGAAGACAGGCAGAGGATGCCGTATGTGGAGGCAGTGTTGCATGAAGTCCTGCGCCTCTGCAATATCGTCCCACTGGGAATCTTCCGCGCCACGTCTCAAGACGCAGTGGTGCGTGGCTACACCATTCCCAAGGGCACCATGGTCATCACTAACTTGTACTCTGTACACTTTGATGAGAAGTACTGGAGCGACCCGTCAATCTTCTGCCCAGAGCGCTTTCTAGACTGCAATGGCAAATTCATCCGACATGAAGCGTTTCTCCCCTTCTCCATAG
Seq A exon
GTAAAAAAAAGCAATTTTTTCAAACATTTAGCATCTAAAAGCTTGTCAGGTTAATATAATCCTTATGTTCTGGTGTCCTTTAG
Seq C2 exon
GTAAGCGACACTGTTTGGGAGAGCAGCTGGCCAGGCTGGAGATGTTCTTGTTCTTTACTACATTGCTCCAGAGGTTTCACCTTCAGTTCTCAGAAGGCTTTATTCCGAGCCTCTCAGCGAAATTGGGCATGACCCTTCAGCCTCAGCCGTATTCCATATGTGCCATCAGGAGGCAGCAGTAAAACTTTCCAGCTTTGAGCTCTGGAACGCGTGCACTCACCTCAGGGGATCCTACCAAGAAACGTCAAAGGCAGAGCAGTTTCCAAGTCTTAAATTCCATCCCGTTTTCAACGGGTAATACTGACCTCTGATGTTGACTTGCTAAATTCTCTGAACGTGTCCTCTTTAGTTTCACAGAAACCAGCCTGAGAGTGATAAGAGTACTGTTACAGAACATGCTGTGAGGCGCACAGAATGAGCACATGTGTGTTACCGAACACGGACCTATAAGAGTTTCAAGATGAAGTGTAGCATGTATCTTTGATAACTTGAACTGAAAACGTGTACTGTGTAACAAAGCCAATGTTGTGCTTGTCAATACGAGAAGAGCTATTGTGTGAATGATTGACAGGGTTTACCTCTATGATGGTTTGGACGGCCTGTCTTTTTCAGCATTCCTTGAATTTCCCCATTTCTAGAGTGAGGAAAGCGAGAGGAGAACAGCTGCTTTTCTCAGAAAGTTTTGGAAATGCTTCAGGATTCCTGTTGGTTTAATGCCATAGATCAGTTGTGCAATAATATCAGCCCAGTCCCTAGTTCATCTCACTGGAAAGAGATTATCTAGAAACTCGAGCTGCCATATTTCTGAGGAAAAAACCATGGTGCTCTCCTGAAAAACTGCACTGCAATATACATTTTATAGAATATCTTTCTCTTTTTTTTACTTCACTTTTTAGACCAGTGTTTGTGCTTATTATATAAAATGTCTGTCTCTAAAAAAAAAAAAATAAAAAGAAATAAAAAACTTTTGTTATGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056587:ENSDART00000079091:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(24.0=100)
A:
NA
C2:
PF0006717=p450=PD(11.9=88.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACACCATTCCCAAGGGCAC
R:
CTCTCCCAAACAGTGTCGCTT
Band lengths:
181-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]