RnoINT0044412 @ rn6
Intron Retention
Gene
ENSRNOG00000011367 | Cyp2r1
Description
cytochrome P450, family 2, subfamily r, polypeptide 1 [Source:RGD Symbol;Acc:1311866]
Coordinates
chr1:184093920-184095854:-
Coord C1 exon
chr1:184095525-184095854
Coord A exon
chr1:184094295-184095524
Coord C2 exon
chr1:184093920-184094294
Length
1230 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
CACTTGCCATTTCTGTTCAGGGA
3' ss Score
7.1
Exon sequences
Seq C1 exon
GACAAGTTCATAAAGAGATTGATTTAATTATGGGACACGACAGGAGGCCTTCTTGGGAAGACAAATGCAAAATGCCTTATACTGAAGCAGTTTTGCATGAAGTTTTAAGATTCTGTAATATAGTTCCACTGGGGATTTTCCATGCAACTTCTGAAGATGCAGTTGTACGTGGCTATTCCATTCCTAAAGGCACAACAGTCATTACAAATCTTTATTCTGTTCACTTTGATGAAAAGTACTGGAAAGACCCAGACATGTTCTATCCTGAGCGATTTCTGGACAGCAGTGGATATTTTACTAAAAAGGAAGCTTTGATTCCTTTTTCTCTAG
Seq A exon
GTAAGAAATCACAAGTATATAATTTTAAAGTATAACAATGATTAATTATTAATAACATCTCAATTTGAAGCAACCTGCTCTAAAGTTGACATTTCTGAGTACATAGCATTATTTTTCTTAGTGTTTTTTCTTTCACATATAACTTGATTGCAATTTCTCTCTAATCTCCCCTGTTCCTCTCCACCTCCCCTCCCAACCAATCTAACCTCTTTGTGTCTCTCATTAGAAAACAAACAGGCTTCTATAGGATAATAATAAAATATAACAAAGTAAAATATAATAAAACCATACTATGACGTCATAGTTGAGTAAACAATAGCACAGTTGGAAAGGAGCCCAGGAAAGGCACAGGAATCAGACATCATATCCATTCAGGAATCCCATAAAGACACCTAACTGGAAGCCGTGATGTATACAGAGGACTTAGTGCAGACCCATGCAGGCCTTGTGCATGCTCAGTCTCTGTGTTCATATGAGTTTTGGTCATATTTGTTTAGAGGACATTGTTTTCTTGGTGTCCTCCATCCTTACTGCTATGTAACATAATTCTTACAAGAGAGAATGGCTTCATTAACGTGATGAGCAGCTGGTTCTATTCAAAACATATCAGTGAATTCATTAAGCTAAAGTTGTTGAGAAGTTGTGACTGGCTGGCCCCTTCCAAAACTTTTTAGCTTGTGAATTTAGAGGTTGTTGTCAAACTTCTAGAGCAAAAATTCAGGAACAAGTATGAGAAACTAAAATGCTTACAAAGGAAAGGAAAGACAAGGCAACTCCAGGTAAAGCTAGAATCTAGCTCTCTTGCCTTCTATTCTATTCTGTCATCTACAACTAGGAAATACTACTTCTACTATGAAATAGAACGTGAATCACAGAACTTTGAAGATGGACTACATCTTTATCCAGTAGGTCAATTGAAATGGACTTTCCTTGGATCAATAAAAATAAAATGTCATACCTCAGAGACCTTCTGTAGCCTGTCATATGCTCTACTGCATTATGCAGAGAAGTCAGAGATGGAATCAAAAATTGTAATGTCCATGATCTAATAAACGGAAATAAGGGAATATGTTTCTTCAATGAACTGATAGTTTCTAATCCTTGAGATTTGAGAAACTCCTCTCATAATACAGTATCTTCTAACATACTTTCCTAATTTCCTGAATGCTACCCAAATATTAGATATTAACTTTAGTAAATGGTCTTTAAACACTTGCCATTTCTGTTCAG
Seq C2 exon
GGAGAAGACACTGTCTTGGAGAACAGCTGGCTCGGATGGAAATGTTCTTGTTTTTTACATCATTGCTTCAGCAATTTCATTTGCATTTCCCACACGAACTAGTTCCAAACTTGAAACCCAGGTTGGGCATGACATTACAACCCCAGGCCTACCTCATCTGTGCAGAAAGACGCTGAAAGAGCACAAATATATTGGGAATAACCTTGTTCAATCGATAATGGTGTTTAGGCCAAAGATACAGTTTTAAAAAGCCAAATAAACACAAATACATCGCTTAAAATAGTACTAGAGCAATAACAAGCATTAGTTATTTTTTTCAAACTTCCATGAATTCTTATTGTAGAATGTATTGAACAGCACAAAGGTACAAGTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011367:ENSRNOT00000067609:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(25.4=100)
A:
NA
C2:
PF0006717=p450=PD(12.5=91.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTGGGGATTTTCCATGCA
R:
GGGGTTGTAATGTCATGCCCA
Band lengths:
349-1579
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]