MmuINT0045104 @ mm10
Intron Retention
Gene
ENSMUSG00000030670 | Cyp2r1
Description
cytochrome P450, family 2, subfamily r, polypeptide 1 [Source:MGI Symbol;Acc:MGI:2449771]
Coordinates
chr7:114550166-114552082:-
Coord C1 exon
chr7:114551753-114552082
Coord A exon
chr7:114550448-114551752
Coord C2 exon
chr7:114550166-114550447
Length
1305 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
CATTTGCTTTTTCTGTTCAGGGA
3' ss Score
8.77
Exon sequences
Seq C1 exon
GACAAGTTCATAAAGAGATTGATTTAATTGTGGGCCACAACAGGAGACCTTCTTGGGAATACAAATGCAAAATGCCTTATACTGAAGCAGTTTTACATGAAGTTTTAAGATTCTGTAATATAGTTCCACTGGGAATTTTCCATGCAACTTCGGAAGATGCAGTTGTACGTGGCTATTCCATTCCTAAAGGCACAACAGTCATTACAAATCTTTATTCTGTTCACTTTGATGAAAAGTACTGGAAAGATCCAGACATGTTCTATCCTGAGCGATTTCTGGACAGCAATGGATATTTTACTAAAAAGGAAGCTTTGATTCCTTTTTCTCTAG
Seq A exon
GTAAGAAAAAATTCACAAGTATATGATTTTAAAGTATAACAATGATATATTATTAATAGCATCTCAATTTGAAGCAACCTGTTCTAGAGTAGACAATTCTGAGTACATAGCATTAATTTTTTCCTTTAGTATTTTTTCTTTTTATTGAAAGTAGTTTTTTCTCACATAACAAAACTTGATCGCAATTTCCCTCTCCTCTTCCCTGTTCCTCTCCATCTCCCCTCCTATCGAATTCAGTCCCTTTGTGTCTCTCATTAGAAAACAAACAGGCTTCTATGGGGTAATAATAAAATATAGCAAAGTAAAATATAAAACAAAACCTGTCACATCATAGTTGAGTAAACAATAGCAGAGTTAGAAAGGAGCCCAGAGAAGGCACAAGAATCATATACCCAGGAATCCCATAAAAACACTTAACTGGAAGCCATGAGATATGTGTGTGCGTGTATGTGTATGTGCACATGCAGAGGACTTAATGCAGACCCATGCAGGCCTTGTGCATGCTCAGTCTTTGTGTTCATATGAGTTTTGATCATATTTGTTTAGAGTGCATTCTTTCCTTGGTGTCCTCCATCCCTACTCATATATAACATTAATTCTTACAGGAGAGAATGGTTTCATTAAAGTGATGAACAGCTGTTTCTATTCAAAACATATCTCAGTTAATTAAAGCTAAAGTTGTTGAGAAGGTGCAACTGGCTGGTTCCTTCCAAAACTTCTTAGCTTGTGAATTTAGAGGTTTTTGCCAAACTTGTAGAGAGAAAATTCAGGAACAAGTATGAGAAACTGAAATGCATAGAAAGGAAAGGAAAAACAAGACAAACTTAAGTAAAGCTAGAGTCTAGCTCTCTTGCCTTCTAGTTTATTATGTCATCTCCAACTAGAAAATACTACTTCTGCTATGAAAGAGAACATGAATCACAGAACTTGGAAGATGGACTACATCTTTATCACTGAGTAAAGTATCCAGTAGGTCAGTTGAAATGGGCTTCCCTTGGATCAATAAAAACAAAATGTCATACCTCAAAGACCTTCTATAGTCTGCCATATGCTCTATTGCATTATGCAGAGAATTCAGAGATGGAATCAAAAAATTTAAAGCCCATGATCTGATAAAAGGAAATAAAGGAATATGTTTCTTCAATGAAGTGATAGTTTCTAATCTTTGAGATTTGAGAAACTCCTCTCATAATACAGTATCTTCTAGCATACTTTAATTTCTCAGTTTCCTGAATGCCACCTGAATATTAGATATTATTAAATGATTTAGTAAATGATTTTTAAACATTTGCTTTTTCTGTTCAG
Seq C2 exon
GGAGAAGACATTGTCTTGGAGAACAGCTGGCTCGAATGGAAATGTTCTTGTTTTTTACATCATTACTTCAGCAATTTCATTTGCATTTTCCACATGAACTAGTTCCAAATCTGAAGCCCAGGTTGGGCATGACATTACAACCCCAGCCCTACCTCATCTGTGCAGAAAGACGCTGAAAGTGCAAAATGTATTGGGGAATAACCTTGTTGAATCACAATAATGGTGTTTGGGCCAAAGCCACATTTTTATAAAGCCAAGTAAACACAAATACACTGTTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030670:ENSMUST00000032908:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(1.2=0.9),PF0006717=p450=FE(62.1=100)
A:
NA
C2:
PF0006717=p450=PD(11.8=91.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATGCAGTTGTACGTGGCT
R:
TCTGCACAGATGAGGTAGGGC
Band lengths:
343-1648
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types