BtaINT0046220 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012972 | CYP2U1
Description
cytochrome P450, family 2, subfamily U, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20582]
Coordinates
chr6:18512364-18515800:-
Coord C1 exon
chr6:18515633-18515800
Coord A exon
chr6:18514897-18515632
Coord C2 exon
chr6:18512364-18514896
Length
736 bp
Sequences
Splice sites
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
3' ss Seq
TTTTCTGGTCTTATTTTTAGGGA
3' ss Score
10.44
Exon sequences
Seq C1 exon
TGCTCCAAGGTTTTACCATTCCTAAAGGCACAATAATATTACCCAACCTATGGTCAGTACACAGAGACCCAGCCATCTGGGAGAAACCAAATGATTTCTACCCTGATCGATTTCTGGATGATCAAGGACAACTTATTAAAAAGGAAACGTTTATTCCTTTTGGGATAG
Seq A exon
GTCAGTTAAACTTTTATTTTCTTGATGGTATAATTAAGAAAGAAGTAGAACCAGAAGAATCTTTTATTATTTCATGATATTGTTTTAAAAATGTGTCTTTCTTGACAAGCCAATATATGAGAGAAATAATTTAGATAATGCATCTCCACTATGTTCATTTCATATTAAAAAAAATGAAAGCAGTTGATTTTAAATCATTAAACGTGACTAGAAATCTTCCTTTTTGCGTTGTCCAGGTGATTGTTGAAGTCCCAGAGAACTATTAGAGTTAAGAGCAGCTTTCGACCTGCCTGAATGGTGGGTAAGAGGGTGGGATCTCTGATCTCAGCAGTTACTCTTTTAGGTCCCTAGATGAGGGCAAGGAGGCTTCTTTCTATAGAAAAGGAATGCTCCGGAGATTCTCACGTGATGTCTCTTCTCTTCAATCTTCCAGGTAAGAGCAGGGAAAGAGATAAGTAGGTATGGAGGAGGAGACGAGGTAGCCCGCCTTGTTGGGTCCATCTCCAGTTTCTATCTAGGATGAGCATAGATTTTTGTGAGGAGTCAGCTAAAATGTGAACTTGGTAAAAATTCTAATAGACTATGGGAAGCCCTGGGGTATATGTGGCAATTTTATTTCAAACTTCTCAGTGTCTGCCTTTAAAACACTCAATTTAGAGTTTTTGTATAAATGTATCCCTTTTGAGGTAGGAAAAGGGGTGGTCTTGTAATCCCTTTTTTCTGGTCTTATTTTTAG
Seq C2 exon
GGAAGCGGGTGTGTATGGGAGAGCAGCTGGCAAAGATGGAGTTGTTCCTGATGTTCGTGAGCCTAATGCAGAGTTTCACGTTTGTTTTACCTAAGGATTCAAAGCCAATCCTGACTGGGAAATATGGTCTAACTTTAGCCCCACATCCATTTAATATAATCATTTCAAAGAGATAAAGAACATCTCCATGAAGAGATGGTGCAGAGAATGTAAATACACATCCTTCTAAACAGCCTTCCTTCTGTAATTGACAGTGGATCTGGCAACTCTGAAAATCTAGGTTGGCCTCAGATCAGAGAGAGATTGGAAAGAGGGTCAAACATGGGGACTTTTGCTTTTGAGGGGGGGTTCCTCTGCAGGAAACTTCAGCCATTTCAGTAATGCATGTGACTTGGGGGATTGCGACCAAAGTAGTGGATGGGGAAGCAGGCAATATGGATTTTTATGCCCAGTGGGCTCCACCAGTGGGCATTTCATCTCACCTCTCAGTGCCTCAGTCTTTCCACATGGAAGGCAGTGGTAACAAAACCTGCCTCATATCTTGGCATGCATGTGTGCATGCTAAGTCACTTCAGTGGTCTCCAACTCTGTGATCCTATGGACTGCCTGCCAGGCTCCTGTGTCCATGCGATTCTCCAGACAAGAATACTAGAATGGGTTGCCATTCCCTTCTCCAGGGGATCGTCCAGACCCACGGATCAAACCTGGGTCTCCTGCGGCTCCTGCATTGCAGGCAGATTCTTTACCACTGAGCTACTGCAGACACTCATCTCGGCTTGAACGATGGTCAAATGCCCCATATCTTTACTGACATCACTAAGATGCTGTTAAGTTCTGGAGAACAAATCCGGGAGAAGGAAGACCTACCTGTTTAAGACCCATGGCAACATGAAAGTGGTGTTCAGACTTTAATACTTCATCAGAGAAGGATGTGGGCTTGAGTGACAATGAATTAGAACTTATCTTGGAACAGAGTTTATGTCAGTTTTAGGGGACTTGTTATCATTACCCTTTTACGATTTTAGTTTTTACTTTTTGTAGACATAGGATGAAGAGAACCCTTGTTCAGTATGTTGAGGAATGGATATGGTCTGAATGTATGTTTGCCTTCTCTTTCAACTACATCAACAGTGAGCCTAGATGAAGAAGTGGCTTCATGGCAGGATTCCTTTCTGCTGTCTTTACCCACAAGGATGTAGCTCTAGCTTTTAACTTGAGCCCTGAATAGTGAGCTCAGGAATTTTGATACTAGGATTAATAAGGGAAGGATTTGAGCTGTACTGCACGTTCCTTTCCTGTTCTTCCTTCCTGCCACTAGGCCTAACATATCTCATCCTTGAAGACTCACAAAGACAGGAAGGCATTCTTTTGCTTATTAAGATAACTAAATTGTTTCTTAATAAATAAGCTCCTTCTGAAAGAGCAGTTCTCGAAAAAGGTTAACGCCCTCTTTCAGGAGGTGTTTGGAAATATGGGGGTGTGTTTTTCGTTATCATAATCATGGGGGTGCTACTGGCCTTTTTTGCTGCCACGAAGCCAGGATGATAAATGTCTGAGCAGTCCTAGACAGTGAAGAGCAGACCTATCCACAGAGAACATGCCCCAAAAGTGGCCAGGCCTTTCCTTTATTCTCCCATTATATTCCATATATAGAAGGAATCGTGATATAATATGAGCAGCTGTTCTTTTTGAGCCTTCCTCATTCTGGCAACATATTTTATGCTTCAGTTGAATACTTATGTAATTCTTACAGACTGTCCAGTCACAGGATGATATTTTGTAGCTATGAAGCTCAAGCTTAGAGAAGCTAAGGACTTCGTGTAGTTATTAAGAAGAAGTACTACTGTTTGTTTCAAACCTACCAGTTTATAACAGGAGAGTTCTTCCTGTACCACTTCTTGGTACTTCCTCCACTAGATCCCATAGCAGCCTATCTCTCTGCATTTTCAACATGGATAAATGACATACAGGCCAATCTTTAGGTGCCTTGAGCATTTTTTGTTAATTAAAATAGAAAACCTAATGAATGAAATGCCTAGGCACTGTGAGTGAATGGAGAGTTTGTTGTGCAGATCTTGGATGGATGGTGTGGGTTACCCTGCGTCATGAGCAGGGCAGTTTGTTCCTCATTTGAAATTGCATATGCTTTGGAATTGCACTATTAACTTTGCATTAGCAAATTTATTACTCCTCGATTTATAAATACATTTTCAGTATTCCCTAAACAGTTTGCAGCTAATTTGAGAAAAAAAACTATTCTGTGAGAGTATGTTGAAATAAGATGTTTATTAAACTTTAAAACAATGCCTTAAACTGTAGCACTTTAAAAACATCTGTTTATGGCAAATCACTGCGAAGACTTAGTGCTTTCCTCCCATGTGTTGATGTTTTACGATTTTGTACTTTATGATTTACTTGAAGTGTAAAAAGAATAGTACTTTGTTTGGTAATTCTGCCTGATACCTACTTTTAGTCCTCATCGTGAACATAATTTTTGATGTTTTTATTAAACTTTTAATTTTAACTAAGTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012972:ENSBTAT00000017246:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.5=100)
A:
NA
C2:
PF0006717=p450=PD(12.1=91.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTACACAGAGACCCAGCC
R:
GGAAGGCTGTTTAGAAGGATGTGT
Band lengths:
354-1090
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]