HsaINT0044334 @ hg38
Intron Retention
Gene
ENSG00000155016 | CYP2U1
Description
cytochrome P450 family 2 subfamily U member 1 [Source:HGNC Symbol;Acc:HGNC:20582]
Coordinates
chr4:107949350-107953457:+
Coord C1 exon
chr4:107949350-107949517
Coord A exon
chr4:107949518-107950244
Coord C2 exon
chr4:107950245-107953457
Length
727 bp
Sequences
Splice sites
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
3' ss Seq
TTTTCTGATCTCATTTTTAGGGA
3' ss Score
11.52
Exon sequences
Seq C1 exon
TGCTCCAAGGGTATACCATTCCTAAAGGCACATTGATCTTACCCAACCTGTGGTCAGTACATAGAGACCCAGCCATTTGGGAGAAACCGGAGGATTTCTACCCTAATCGATTTCTGGATGACCAAGGACAACTAATTAAAAAAGAAACCTTTATTCCTTTTGGGATAG
Seq A exon
GTCAGTTACACTTTTTTAAACTGCATAATTTTTAAAAGAAGTAGAACTAAAATAATATTTTATTATTTCATGTTGTTTTAAAAATGTTTCTTTCTTGGCAAGCTAATATAAGAGAAGGGATCAATAATTTAGACAAGGCATCTCCCCTATGTTCATTTCAGATTTTAATAAAGCAGTTGGTTTTAAATCTCTAAATGTGACTAGAAATTTTACTTTCAGAGCTGATCAGGTAATTTTGGGGGGTCCCAGGGAGCTACTTAAGAGCAATTTCTGATCTGGTCTGGTGGGTGAGAGGATGGGTTCTCTAATCTCAACAGTTCCTCTTTTAGGTTCCTAGATTAGGAACATAGAATTCTTTCTGTGGAAAAAGGGAGGCTCTAGGGATTCTTATCTGAATTTTTTTGCCTTAATCTTCCAGGCAAAAGTGGAGGAAAGAGGTAAGTAGGCACAGAAGAGACAGGATAGCTGCCACACTGGATCTGTCTCTAGTTCCTGTCTAGAATGGGGATAGGTTTTTATGAGTAAGAGTTAAAATGTGGATTTGATATGTAAAAATTCTGATCAGCATATGCTGTGGGAGGCTATGTGGTATATATGGCAATTTGACTTAAAAACTCCATCTGCATTTAGAATACTCAATTTAGATATTTCATATAAATTTGTACTTTTTGAAATAGGAGAAGGGATGGTATTATAATCCTTCATTTTTTTCTGATCTCATTTTTAG
Seq C2 exon
GGAAGCGGGTGTGTATGGGAGAACAACTGGCAAAGATGGAATTATTCCTAATGTTTGTGAGCCTAATGCAGAGTTTCGCATTTGCTTTACCTGAGGATTCTAAGAAGCCCCTCCTGACTGGAAGATTTGGTCTAACTTTAGCCCCACATCCATTTAATATAACTATTTCAAGGAGATGAAGAGCATCTCCAAGAAGAGATGGTAAAAAGATATATAAATACATATCCTTCTAAGCAGATTCTTCCTACTGCAAAGGACAGTGAATCCAGCAACTCAGTGGATCCAAGCTGGGCTCAGAGGTCGGAAGGAGGGTAGAGCACACTGGGAGGTTTCATCTTGGAGGATTCCTCAGCAGGATACTTCAGCCATTTTAGTAATGCAGGTCTGTGATTTGGGGGATAGAAAACAAAGTACCTATGAAACGGGATATCTGGATTTTACTTGCAGTGGCTTCCACCGATGGGCCAATCTTCTCATTTCTTAGTGCCTCAGACATCCCATATGTAAAATGAGAGTAATAAAACTTGGCTTCTCTCTACCTCTCAGCACTAATGATGGTCAAATGCCTTACATCTTTTCTGATATCTCTAAAATGCTGTTAAGTTCTGGAGAAGAACTTCAGGAGAAGAAGATCTATCAGCTGGCTTTTAAAGACCTATGACAACATGAAAGTGGTGTTCAGCCTGGAATGCTTTGTCAGAGATGGGTGTGGATTTAGGTTATACTGGGGGAGAACTTTTCTCAGCACAGATTCTATGCCAGCTTCTTTGGGCTTGTTCTGTCACTATCTTTTTGTTTATGATTTTAGTTTTTACTTTTTGTAGATGTGGGATGAAGTGGACTCTGTCGTGTATATTGAGGAAAAAAGAAATTATAATTTTAAAAAATCCCTTGTAGGATTATTATCTAAATTTATATGTCTAACTTCTACTACAACTACAGGAACAGTGAGCCTTGCTACTTCTTTAGTAGCTTCTTGGCAGAATTCCTTTCTACTGAGTTATTTGCAAAGATGCAGCTCTACCTTTTTACTTAAGGCCTGAATGGTGAGCATGGGGATTTTGATACTGGGACTCATCAGGAAAGGATTCTGCTTTCAAACTATACTGAACATTCCTGTCCTAGCGTCCCTGCCACCAGGCCCAATGCATCTGATCCTTGAATATACTCTCAAAGAATTCACTCTCTTTTTATTAAGAGAACTAAATTGTTTCTAAATGTAGATGGTCCCTCTGGAAAAGCAGTTTTCAGCAGGGGTGGTAACCCCTTCAGAGGGAGTTTGGAAATGTGTGGGTATGATTCTTGGTTATCATAATGATGGGGGTGCTACTGGCCTTCTGCTGCCATGGGACCAGGATGCTAAATGTCAAGGTAGTCCTATACAGTGAAGAATTGTCCTGCTCAAGATGCCAGGATTTCCCCCAGTGAGAACATGCTCTAAGGAATGACCACCCCTTTCTTTTATTCTCCCACAGTGCTCCATGTACAGAAGTAAGCATAGCAGTCATATGAGCAACCACATTCCTGAACCTTTCCTCATGCTGGCTCTACACTTAATCCTTTACTTGTATGTTTCTGTAATTCTTACATAAATTCTATTAAGAGGGTGGCATACTGTAGTGGATGAAGCTGAGGCTTATAGTAGGTAAGGCACAAAGTTAAAAAGTAACATCACTGGGTTTCAAACCTACTGGTCTCTGTGACTAAAGAACACTTTCAGAACCACTTCTTGATTCTGCCACCACTTGATCCCATAACAGGCTACCCCTTGGCCTCATGCTGGAGTTGTGTGTGTCTGTCTTCATCCCAGGCTGAGCTCCTTGAGGTGAGGATGTTGTGCTGTTTGCCTCCCTCACAGTGCCTTGGTCTTAGTGGATGCCCAGTTGTCTTGTGAATGACTTTTAAGAAGTGTACTTAAGAGAAAAATCCTACCTTATTTGAATAATTACAAGTCATGTTTTTGTTGCTTAAAGGTGATAAATCAGTGTATATTATTTGTTAATGTCCATTAAAGCCAGTTTTTAAAAAAATCACTGGACTTTTGTGTTTACCATTTAAAACAACCATTTTAAACAAACTTAGAACGATGCCTTAGCTGTTTATAGGTAACAGAATGTAAACTCCCACCACCTGGAGACTAGGCCATATCCAGGGACCTCACACTGACTTTCCTAAAGGAGAGAAGCAGCTACGCTGTTCATACTGATAGAGAAGAGGGCAAGAAAAGATCCAGAGTGGCTGTTACTTTGAAAATTAAACGAAAGATGAAATTCTGAACTTAAAACACTTCTGTTTGGCCTTCTATAACTGATCACCCTTCTTTGCTCTGTTTTCCAGATAAATGGAGACACCAGATCTCCCTAACCTCTGACTTCTGCCGTTAGCCATACTCTGTGTAGTTAGATCTCAGTCTGGGAATGGCATTCCAGGGCAATTGTGAACATGAGGCTAGATTTTTCCTTTGATTTAGCACATTCCTAGGCAGACTTTTGCAAGCTCAAAAAATGAAAATAATATCTGCTTAACCAAAACATAATCATAGGAAGAAGAAAAATTTTAAAATGATTGATTTTTGACTCTACATTCTTTATCTACCATACTGCTCTTTTCCTTTTTAGAAATATTACTAAGCACTTTCCGTATAGATAAATGAAATACAGGCTAATCTTTAGGTGTCTTAGGAATTTTTGCTTTTTGAAAAAGAAAAGCTAATAGCCTAACTGCAGAGGAACTGAGTGGATGGGGTAGCTGCTGTATAGATTTTTAGATGAGATGATACAGTGTGGATTACACTGTACCTTGGGCGGGAGAGTTTGTTCTTGATATGGAATTCATATGCTTTTGAATTGCACTAATAACTCAGCATTAACAAGTATATTACTCCTTAAATTATACATGCATTTTCAATATTCCTAACCAAATAGTTTATAGCTTATTGAGAAGAAGTCTGTTCTTGGAGAGATGTTGAAATTAGATGTTTATTAAACTTTAAAATATAATGCCTTAAGCTGTGGCACTTTAAAAACATCTTTATATATAAATTGCTAAAAGGACTGTTAATGCTTTTCTCAGACACATTGGCATTTTACAATTTTGCACATGGTTTATTTGAAATCAAAAAATAACTATACTTTGTTTTATAAGTCTACCTAATATCTCATTTTTGATTCTCATCGTTAGCACAGTTTTGTTGCTTTTATTAAACTATTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155016:ENST00000332884:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
NA
C2:
PF0006717=p450=PD(12.5=91.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATTTCTGGATGACCAAGGACA
R:
TGGATCCACTGAGTTGCTGGA
Band lengths:
346-1073
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development