GgaINT0068661 @ galGal3
Intron Retention
Gene
ENSGALG00000010532 | F1NLH1_CHICK
Description
NA
Coordinates
chr4:39316968-39318018:-
Coord C1 exon
chr4:39317851-39318018
Coord A exon
chr4:39317458-39317850
Coord C2 exon
chr4:39316968-39317457
Length
393 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TCTTTCTAATTATTCTTTAGGTA
3' ss Score
10.16
Exon sequences
Seq C1 exon
TGCTGCAGGGATATACTATTCCAAAGGGCAGTGTGATTGTGCCCAACTTGTGGTCGGTACACAGAGATCCTAATATTTGGGAGAACCCAGATGACTTCCAACCAACAAGATTTCTGGATGAAAATGGCCAGATAATTAAGAAAGAGGCATTCATTCCTTTTGGAATGG
Seq A exon
GTAAGATACCCACACACTGTTTTAGCAAGTGTAGGGCCTCAGAGGCATGACGTTTAAAAGGACTCACAGGACTTGTTTTATTATTGCATTTTGGTGGCTTGCAAAATGGGTTGGGTTCTTAAAAGCTGCGGTTGCCGAGCAGAAATGAGAAACAATGAATCCTGCTTTGATAATACTTTTCCTATGGATGTAAGTACTGTTAATATCAAGCAGTAAAGCTTAGCAAAACTCAGACTCAAATATCAGAGACCGAAGCTTTGGAAGTCCATAACTTACTCATAGCTAGAGCAATTCTGCATTTGGAATACACTGGCATAGGAATTGCATGTGTGTTAACAAATGGATCAACAGTATAAAAAAACACTAATATGTCTCTTTCTAATTATTCTTTAG
Seq C2 exon
GTAAACGTGTGTGCATGGGAGAGCAGTTGGCAAAAATGGAGCTGTTCTTAATTTTTACAAGTCTAATGCAAAGCTTTACCTTTTTGTACCCTGAAAATGCTACAAAACCATCTATGGAGGGAAGGTTTGGTCTAACTTTAGCTCCCTGTCCATTCAAAATAATAGCTTTGGAGAGATGATACAACATCACAAATAGATGAAAAAGAAAGAAATGCTGCACTTTTAAAATCCAGCTTTATTTTCTTTCCAGTTTATTTTGTCACTTTCTTTCCAGAAAAACAGTAACTGCATAGGCTTTCATACCAATGAGGAAGATCCATTTGCAATTCTGGACAGAGAACTATTTATTTATTTTTTTGTCAGCTGTTGCATTCCACAAATGAACTGACAATATAGTTTGCAATCCGATATTAAAACTTGCTGGGCTTAACTCCTCTGTCTGTTAAGCTAAATACTGTTTGCTTGTCAAGTGTTAATTATGGGAGAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010532:ENSGALT00000017145:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(33.7=100)
A:
NA
C2:
PF0006717=p450=PD(33.1=91.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCGGTACACAGAGATCCT
R:
AGCTGGATTTTAAAAGTGCAGCA
Band lengths:
353-746
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]