GgaINT0068661 @ galGal4
Intron Retention
Gene
ENSGALG00000027908 | CYP2U1
Description
cytochrome P450, family 2, subfamily U, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20582]
Coordinates
chr4:37409174-37411216:-
Coord C1 exon
chr4:37411049-37411216
Coord A exon
chr4:37410656-37411048
Coord C2 exon
chr4:37409174-37410655
Length
393 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TCTTTCTAATTATTCTTTAGGTA
3' ss Score
10.16
Exon sequences
Seq C1 exon
TGCTGCAGGGATATACTATTCCAAAGGGCAGTGTGATTGTGCCCAACTTGTGGTCGGTACACAGAGATCCTAATATTTGGGAGAACCCAGATGACTTCCAACCAACAAGATTTCTGGATGAAAATGGCCAGATAATTAAGAAAGAGGCATTCATTCCTTTTGGAATGG
Seq A exon
GTAAGATACCCACACACTGTTTTAGCAAGTGTAGGGCCTCAGAGGCATGACGTTTAAAAGGACTCACAGGACTTGTTTTATTATTGCATTTTGGTGGCTTGCAAAATGGGTTGGGTTCTTAAAAGCTGCGGTTGCCGAGCAGAAATGAGAAACAATGAATCCTGCTTTGATAATACTTTTCCTATGGATGTAAGTACTGTTAATATCAAGCAGTAAAGCTTAGCAAAACTCAGACTCAAATATCAGAGACCGAAGCTTTGGAAGTCCATAACTTACTCATAGCTAGAGCAATTCTGCATTTGGAATACACTGGCATAGGAATTGCATGTGTGCTAACAAATGGATCAACAGTATAAAAAAACACTAATATGTCTCTTTCTAATTATTCTTTAG
Seq C2 exon
GTAAACGTGTGTGCATGGGAGAGCAGTTGGCAAAAATGGAGCTGTTCTTAATTTTTACAAGTCTAATGCAAAGCTTTACCTTTTTGTACCCTGAAAATGCTACAAAACCATCTATGGAGGGAAGGTTTGGTCTAACTTTAGCTCCCTGTCCATTCAAAATAATAGCTTTGGAGAGATGATACAACATCACAAATAGATGAAAAAGAAAGAAATGCTGCACTTTTAAAATCCAGCTTTATTTTCTTTCCAGTTTATTTTGTCACTTTCTTTCCAGAAAAACAGTAACTGCATAGGCTTTCATACCAATGAGGAAGATCCATTTGCAATTCTGGACAGAGAACTATTTATTTATTTTTTTGTCAGCTGTTGCATTCCACAAATGAACTGACAATATAGTTTGCAATCCGATATTAAAACTTGCTGGGCTTAACTCCTCTGTCTGTTAAGCTAAATACTGTTTGCTTGTCAAGTGTTAATTATGGGAGAATGGTCCAAAAGAGGCAGTTAATCCTATAGTGAATTTTAATTGTTATTTTGGTGAAAGCAGGATGTGAACTTTTATCAAATGACTGAAGGACATCATCTTACAGAAGAATTAATGAATAAGAGGATGTTGTTAGCATTTTCTGTTCAAAGAAACATTACAAACATAGTGGAGTTCAAATAACAATGAATACTTTATTGAAAGAACTGAATGATAGCTCTTTTAACCTTGAAGCATTCTGTCTAGTGAGTAACTTACAGGTGGAGACTGGATCAAATCAGTCTCTATTCCTGGATCCAGATGTCCTTGATTATCAGAGCTTCCTGTAAACATGCAGGTACCAACTCTAAAAAAAAAAACACGCCAGGTTCATTTGGAGGCCTAGTGAATCGTTGCATATACCAGGTACTTAACCTGGAGATATGAAAGGAATGCACAGCCTCTGAATACAGATGATTTATTTCTAAATATAAACGAGAGCTAATTTCTCTAACATAAAGCAGAACTCCGGTGCCAAGTAGGTATCCAAGACTACACATCTGTGATAACACTCTTCCCTGTTTTGCTTATGTCACAAATGATAGTCTGTTCTCTGGGTGCAGCCTGGACAAGACCACCAGCCTGTTCATCAGGAAGACATCTGCATGGATAATCCTGAAGCTAGGGCTTGCACTAAGGTTCTTCCTTACAGGCAGTGTGGATGGGACTGCCACAACCTTTTTGGCTTTGAAAACTGGAATCTTACATCAAACACGTCAACATAGTACTATAGATGTAGGCCTTAAAAGTTTAAACATAGAAATTAGGAATCTAACATACCTGAGGTTTGACTGTAGAGGCTGTTTCTTTGTTATCTTCTAAATGGTGTAAAAAGATCTGTAGTCCACATAACATTATTGGATCAGAACCTTACTCTTTCCTCAAGTATAATTTTAGTGCTGTTTACTACTATCAAACTGAGCATCAGGGAAGCCTGTTTTTAGGTATTTCAAAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027908:ENSGALT00000044058:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.2=100)
A:
NA
C2:
PF0006717=p450=PD(12.0=91.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCGGTACACAGAGATCCT
R:
AGCTGGATTTTAAAAGTGCAGCA
Band lengths:
353-746
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]