DreINT0054292 @ danRer10
Intron Retention
Gene
ENSDARG00000026548 | cyp2u1
Description
cytochrome P450, family 2, subfamily U, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-070730-1]
Coordinates
chr1:49279576-49282414:-
Coord C1 exon
chr1:49282247-49282414
Coord A exon
chr1:49279769-49282246
Coord C2 exon
chr1:49279576-49279768
Length
2478 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGT
5' ss Score
7.43
3' ss Seq
AAGTGTTGTGACTCTCACAGGGC
3' ss Score
5.95
Exon sequences
Seq C1 exon
AGTTCAGAGGGTTCACCATCCCTAAAGGAACGGTTATCATCCCAAACCTCTGGTCAGTTCACAGGGATCCCACAGTGTGGGAAAATCCTGATGACTTCAATCCATCACGATTTCTAGATGACCAGGGAAAGATTCTCAGGAAAGACTGCTTTATTCCATTTGGATTGG
Seq A exon
GTATGTTTCATAAGTCATGCATCTTCGAATAAAACAAACAGTGCCAATGTTATGCGATTTCAAAGGGTGCTGTTTTTGTTTTGTAGTTTCTTGCTACATTTCTTAATTCTTTCAAGGTCAAAAAAAGACTTGCAATTTTCTCATAAGTTTCACTGCAGCATCAGCTCTTTTTCCAAAACTGTTGATTAAAGGTGCTGTAAGTTTTTGACTCTCCTATAGCATAAAAATACCATAATATGTTTGCAGATATTTAAGAAACGTGCCAAGTGAACATTCTTGTTTATCTGAAAAGCAATGCTGAAGTCCGATATTCTGCTTTGGAAATACGTTTCTGTGCCGGAATGTCTTAGTTTTAGTTTTTATTAGCCTGCCCAATGCCAGTTTAGCCAATTATATTTCAGCACCCTGGATTGTCTTGGTGGAAAACCGCATATTTCATTCATTCAGTCAGGAAGACTGTCAAAGCATGCATCTGTGACCAAAATGCGAACTCCGGTGGACAGTAGTAGGACAGCAGACTCTAGAATGAGGTGCAGATTCAGAGTTCCACATGAGGTGGTGATTAATTAGCAAATAATATTACAAATGTAATATTTTAATACATTGTAACTTAGGGTCCTAAAATTATGATACATGACGAGAAAAATGATAAGGTTTACTCATGAAATGGTAAGGTTTATAATCAAATTAATACATATTAAACATATTCCTTCTATCGTGTACCGTTGTTTTTATTTAAACATGATTTAAATCAGCCTTTAGGCTCGACCGTCAGACTGGCTCCTGTTGGTCAATCTGGCAACCTGCACTTGCATTTGTTTCGATCCTGGAATGTAATACCTAGTTCAACCACTAGGTGTCAAATTTACCGTACCTTTAAAGACTCCAGCCTCCATTCACTTCCATAGTTTTTTCAACTATGGATGCTTTTACACATAGACTTTTGTTTCGGAACCCGTCTCATTTGCCCAGTTAAAGCGATTCGCTTGGCATATGTGAATCCAGCAATAGCGATCGGATCCGCGTTAAAACAATCAGTCCAAGATCGTCTGAATGAGGTGGTCTCGGCTCGATTGAAACTAATTCTGGAGCAGATCGATTGTGGTGAGAAAGCGATAATCCGAGCCCGGCTATTAGGGGTGTAACGATATTACAAACCGAACCGAAATATCGTGATACACCAACCACGATACGCATCGCGAAACTCTCGTGGCGTACCGCGGTATTCTCACGCCCCCTGCTGCCCATTATTGAGGTTGACGTCACTTGTCTCTAAGTAATTGAAACCAATTTAAACACATCTTTATTTTATTACATTTGATTGAAATGTATTAGTAATGATGAGCTTTTGTACTAAAAATTATATTCTAAAGTTAGTATTTTCCAAGTGCTTGTCTTGTCATGTGACTTGAGTGAGCGATAGTATTCGCATAGTATTGAGATTGCAGATCCCCCAGACACATTTAAGTCGCCTGTGTGGGAACATTTTTGTCTTCCAGTGGAGTACAGGAATATAACTTGTGTTATAGACAAAGCGCACGCGTATCCGTTCTAACTTTCACGAAACTTACTTATAAGGAATAACATTTAAAAAGTGTGGTAATTTTACAATGTGAGGGTGTAAGCAAAAGACGGCAAACAAAAGTGTTTAATGTACAAAAGTGAAACCAGAATAATGCCCAAATATATACAAAAAAAGAGAAATATTTACAATAATAAAAATAATATAATAAACCTGCAAATTCAAACAAAGTATCAAACAAAAATAGTTAATAGTTAAACTCGAGTTAGAGGATGATAGTGAAACCAAACAAAAGAAAGAAATAAAACAAAACAACTCTAACTCATGAATAACCCTTTACCTCGCTAGAAACTGATGAAAATAAACGTTTTCAGCGCAGTGCGACGTATTTTTCCGTATACTGAACTTGCCATGTGAAAGAGAACCACACCAAGAGCAAAGGGCAACAATGTAACAATTTTAATCCCTGTTTCTGAACAAATAATTTGATTCACAGGTGTGAAAGCACCCTAAGACTACTTCTGCTTCTGAGAAATCCTAAGAAAAAGTTCTAAAACAAACAAGCTCACTTCCACATCGCAGAATACAGTCAATACTTTGGATTTGGATTTGCTATTGCACTGCCGAAAAGAGCGCAGTGTCGACTTGACATGTTGACAACACAAACCAAATTATTCCAGGCCTCAGATACACGTCAAATTAGATTATAGACTTGCTTCATGCTAAATTGTTATGAACTACATAGGTTAGTAAAACTGGATGCTTTATTTAGGCATTTCAGGGTCGCTTCTTTCTGCAATTTTGTCGTAACAGTAGAAACAGACAACAAAAAAAGGTACCCTTATCGCTCAGTAAAAACAAGCCATTTAAAACAGCTAAAATAAAGGCACTTTAGGCTACCAACTACTATTGCTCAAACTGCACATTGCTGATTTAAAGTGTTGTGACTCTCACAG
Seq C2 exon
GGCGCAGAGTGTGCATGGGAGAGCAGCTGGCGAAGATGGAGCTGTTTCTGATGTTCACCAGCCTGATGCAGACCTTCACATTCAGGTTTCCAGAGGGAGCAACTGCTCCTTCCATGCACGGACGCTTCGGCCTGACTCTGGCTCCATGCCCGTTCACTGTCTGTGTCAAAACACGCTGAACGGGGCTTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026548:ENSDART00000048281:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.5=100)
A:
NA
C2:
PF0006717=p450=PD(12.3=91.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]