BtaINT0046418 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008329 | CYTIP
Description
Bos taurus cytohesin 1 interacting protein (CYTIP), mRNA. [Source:RefSeq mRNA;Acc:NM_001102243]
Coordinates
chr2:38706970-38711144:+
Coord C1 exon
chr2:38706970-38707036
Coord A exon
chr2:38707037-38709683
Coord C2 exon
chr2:38709684-38711144
Length
2647 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
3' ss Seq
CTTTCTTTTCTGCACTGTAGGTG
3' ss Score
10.86
Exon sequences
Seq C1 exon
CAAACCTTAAAGAAGAAATGGGTGGAGTTCAGATCTCTGCAGTTACAGGAACAGCGCCTGCTTCATG
Seq A exon
GTAAATGTGATTTCCGGTTCAGAAACCACACTTACATTTCATTCTTTCAGTACTTCTGTGTCTAAATTGTTTTAAGATTGTCATCATTACAAGGAAAAAATTGTCTAGCATGGGTCAAAAATAGTCTGTATTCCTTTGGCTTGGCTTTTGGAGTGACCAGTGTATTTGGAGGAGGGGTAAGTCAGATGACGCCCCCTCTTCCACACACATAACACATGCACACGAAAACATGGACACACATGCATGCACACACTCGCAAGAAGCACCTGGGGATTTTAGAAGAGCAATATGAATGGTGGCCTCATTTTCTTATTACTTTGGCAGATGAATTAAATTCCTGAGAATACCTTTGGCTCAGGGGCTGCATAGTTCTGAGAAACTCTTGAAACTGGAAAGGTAGCATGCTTCTTGGGTGGAGCTTGTATTATTTGCTCAAATTGTGTAAGTTAGAATAATGCAGAGGTAATCTCCTTCATGGCCCTCAAACCCAGGAAATGTGAAGGATCTTTAAAACAGTAAATGCATGCTTCTTGCCATTGTATGCATTCTGAGAAGAAGGGTTGAGTTTAAAATTCGTTGACTTGGCACTTGCTGTGTGACTGGTATAACCTGAGGAATGAACTTACGTGTGCAAATAATGCACTGAAACTACTAGCTATGTGGGTGTGAAATACAGCTTATATCTTTGTTAGATAAGTCTGACCTAAAGTCTCTATTTATAACCTTACACTATCTGTTTGTTTTAGTGATCATCTGTTTATAGAAAAAAGATATATTTAATTCTTAATTTGGCACTAATTTATGACAGAAGTTGGTGTTCAAGTTCTTTCTTTTCAGAAAATGAAACATATATGAGTTACTTCTCTATTTGTGTTTACAAAGTAATATTCTTAAAAATGTATAACAGGGTTTTTTTGAGGGATCTAAAATTTGCTAACAAGTCAGAGGCACAAATATATGGCTACTTCCTGGATTTCTGTAGACTTCATGGTGTTTGGGATATCTTTGCCTCTACTTGCAGAGGAGCATCCTAAAGGGGAGATGGGGTTTGATCTGATAAGTGTAGGCAGTTTTGTGGTTCTGTGGGCATGGCCTTGTATAGACAAGGTCCTTTGTTCAGGATCAAGGAGATTGGCTCCTCATAAGGCCATTGTCTATATTTTTTGAGAGATTAAAAGAGTTCTTTAGTTTACTTTTTATAGACCTGGAATAAATATCCAGGGCATGAGATTCTACATGCCAAATGCTCTCCAATCAAAAGACATTCATCAACTTGTTGTCAAATGAAATAAAGTAGGTTTTGTTAACAAAAAAGAACGCATTATAACTGGTCACCATAGGGCTGACCCTACTCAACCTTGCAGATCAAATGGAAAAATAAACAAACAGTCTCTCTTAATATTGTCAACCAAGGGCAAAGGAGAGCAGCAGTAGAGACAATCAGCATGAGGTTAAAAAAACACATTTCTGAGTGTGTAATGTCCTATTACTTTTCCTGAAGCAAAGTCACCTTCAAATGATTTTTTTTTCTGGCTAGCATTACAAATAATCTCCTTTCTTTTAGCAGCATACCAAACAACTCAGATAGTACAGAAGCAAGTGGGATATGAACAGGCTGTTGGTGTGAGATTAAAATTTGAGTTTGGAGAGCCCAGATGTAGGTTATAAAAGGTTGATGAAGAAATTCAGCTAAGCAGATGACATTCAATTTTTTCAAATGATTATTTATTTTAGGACAGGGATGTTTTCTGGTACGCTACCATTTCAAAGAATATAAGTATTAAAGTATTCTAAGAATAAACTGGGAATATCGAGGCGCTAAGATATCCTTTCTGTTCTAAGCATCTTTGAATTCTCTAATAATCAGTCCGTAAGGTGCAGGTTTTATAACTGTGATTTCCATACACTTCAAGTGATGTTATAATAATTTTACAATTATTAAAAAATGCAGTAACTAAAAACTGGAGGAACTAAAATAGAGAAAATCCATAAGAGGGCATTTCTCCAAGTATATTCTTTGGAACCCATTTCTATGATGATTTTAATAAAAAGTGGCAGGGCCACTTTAATGTGAGAAATGATTCTTTTGGAAATTCAAAAGTTGCACTGGAATACTGTTAGATGAGTTGAACTATTCTAATGTGAAGGTTTTGTTTCAATTTATTTAATCTAGACCATTTTTTTGTGACCATGGAATCCTTTACATGAAACTAATCCATAAACAAGGTTTTCCCAGGTGGCAGAGTGCTAAAGAATCTGCTCACCAGTGCAGGAGATGCAAGAGATGGAGGTTTGGTCCCTGGGTCAGGAAGATTCCTGGAGTAGAAATGGCAACCCAGTCTAGTATTCTTGTCTGGAAAACTCCATAGACAGAAGAGCCTGGCAGCCTAGAGTCACAGGGTCACAAAGAGTCAAACACAACCAAGTAACTGAGCACCCACAGTCTATGGACAAATAGCTTGAAAAATCATACTCTTAAGCTTATCAAATGATCTCATAGACAGTCACTTATTTGTGCAAGCTTGGTGAAAAGAACTATTTACCCTTACTCTTTCTTGTGCCTTTCAAAGAGAAATTTTGATGTATTTACTTGTAAGGAGTGATGCTTAGATCTATTTCACAGGAGGCTTTCTTTTCTGCACTGTAG
Seq C2 exon
GTGATGCGACTAACTGCCCAAGCTTGGAAAATATGGACATAGATGAATTCACACTGCTTGGACCCCTGCCTGGCGCGGCCCTCCGGGACCGGAATCGATTATCCAGTGCCAGCAGCTGTAAGAGCTGGCTGAGCTCCATGACGATAGACAGTGAGGATGGGTACCAGACCGGTGTGTCTGAAGACTCCGGTCGGGACGCCTTCAGCCGCCAGACAAGCACAGATGACGAGTGCTTTGTCCTGAAGGAAGGAGACGATTTTCTGAAGAGGTCTTCTTCGAGGAGGAATCGGAGCATTAGTTCTGCCAGCAGTGGGTCCATGTCTCCCTTGTGTGAGGGTAACTTCTCAGGCATGTATGGGACCCTGCCCAGGAAAAGCAGAAGGGGAAGCGTCCGGAAACAGCTCTTGAAATTCATCCCAGGCCTTCACCACGCTGTGGAAGAGGAAGAGAGTCGCTTTTAATGGGTTGCCCTGCCCTTTCCTATTAGCTTATTTTGTAAATATCTTCAGATTCCTTTAGATCAGCTCCACCCAGTTTAGTGGGAAAGTGCAGATGGATTGCAAAACTGACATCTCATTTCATGGCTGTAGTGAACTTTATTTAAACTTTTGTACTACTATGTATCTTTTGCAATCTTTTTTTAACCAGAACGGTTCAAGTTCTAAGCAGGCAGTAGGAAAATTAAATAATAGTAAATTACAAAATATAACAAATTAACTCAAGTGCCTGCTCATTTTAATGCTGCCTGTGAAAGCAAGGGTAATATTTATTTTCTAGATTAGTCATGTGAAAAGTTGAGAACTTTTTAGAATCAAGTATAAATAAGAATGTGACAGAATGTAATTATTTGGAATACCTTCTGTAGATTAACTGGTGGGTTACAAAACTTATATTTGCTTGAGCTCAGTAGACTATGGGGAGGCTTATTAATAGGCGTTTTGAATGTTTCTGTTCAAATTTATGAAAGATTAGAAGCGAAGATGATCATCAGCCCTTTTTTTAATATCCACAGTGATAATAAAGCAGGAAGTAGATTTAATAAGAGGATTTAAGCTTTATAAAATCCATTGAAAGATGTTTTCTAAGATGGGTACTAAAGAAGACTATAATAAGGTCTTATTTACTGGTGGCCTAAACAAAATGGATGAGGATGTCTTTCTTACCTGATTCAACTTTTGCTCTTCCTAAACATTGATGACAAGTCTGTAACTCTCAAGATCCTACAGCCTTGTGATGTTTTTTGAACAAATATCTAAAGTTTGAAAAATTAGAGTTAGGAAAAAGATTTTCCTCCTGTGGAATTTTTTCACATTACTCCTCACTTTATATTATATATTCTTAGTAGTTATTGCTGCAGCACTCTCTTGTCTATTAGTTATGTTGGTATCACTTTTACTCCTCATCTTTCAATCACATTTTTATTCAATGCCAATTAAAGTTCATGATTTCTCTGTTCTGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008329:ENSBTAT00000010968:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.222
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]