HsaINT0044650 @ hg38
Intron Retention
Gene
ENSG00000115165 | CYTIP
Description
cytohesin 1 interacting protein [Source:HGNC Symbol;Acc:HGNC:9506]
Coordinates
chr2:157414619-157418589:-
Coord C1 exon
chr2:157418523-157418589
Coord A exon
chr2:157416144-157418522
Coord C2 exon
chr2:157414619-157416143
Length
2379 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
3' ss Seq
CAGTAGACTTTGTGCTCTAGGTG
3' ss Score
5.17
Exon sequences
Seq C1 exon
CAAACTTTGAAACAAAAATGGGTGGAGTACAGATCTCTGCAGTTACAGGAACATCGTCTGCTTCATG
Seq A exon
GTAAATGCAATTTCCTGTTCAGAAACCACACTAACATTACTTCTTTCAGTATTTCTGCCTCAAAGTTGGTTTAAGATTATCATCATTATAAGAAAAATTTGTCTAGTGCTGGTCAAGGAAATGGGTCTGTGTTTCTTTGGCATGAGCTTTGGAATGGCTGTATTTGGAGGAGGGGTAAGGCAAGTCAGATCCACTACTGCGTATCATGACGCAGATGCACATGCACACAGATGCACATGCTCGAAAACAGGCACCTGGAGATTTTAGAAAATCATTGGGGAAGATTGCCTAACTTTCCTTCTACTTCAGTGAATGAATTACATTTCTGAAAACAATCACGGCTAAGGGGCTGTATAGTTTTTAGAAGCTATTAAAGCTGGAATGGTTGCACACTTATTGGGTAGAGCTCCTGTCTTTTGTTTAAATTGCATAAGTTGCATTTATGCAGAGAAATTCTTTTTCATGGCCCCCAAGACAAAGACATAAATGCGTAAGATGAATACAACAGTAAATGCATAGCTCTTGCCATTGAGTGCATTTTTAAGGGAAGGGTTGAGTTTAAAATGTGTTAATTCGCTATTTGTTGTATGATAGATGTAACCAAAGGAATGAACTTTTGTGTACAAATAATTCACTGAAACCACTACGTGGGTGTGAAATATAGCTTATCTCTTCTTTAAATAGCACCAAGCTTAAGTCTGTAACCTAGAATATCTGTTAAAAGTGATAATCAATTTGTTTACCAAAAAAGATAACAATTTAATCCTTAACTAGTCACTAATTTATGGCTTAGAGTTCTGGTATGAACTTCTGTTTTTTTTTTTTTAAATTGAAGTGTTTGAAACTTATGTACAAGTTACTTCTCTTTTTTATGTCTTCATTTAATATTTTTAAAAAATTCATAATAGTTCTTTTGGGTAGTGAAGTTTGTTAGAGAGGCAGAAATATTTAATACAAAAACTTCTTTATGGCCTTGTAAATTCAGCCACCTCCTTGCTTTCTTTAGACATGAGGGCTTTTTAGCCTCATTTCCACTTCTGGAGCATCCTGAATGGCCCAGTGAATATAAATTCTTGCTGTTCTATAGAAACAGCCTTGTATAGACAACATTGTTAGGTCAGGATCCTCATAAAGTCATTGTTGTACATATTTTTTGAGCAATTGAAGGAGTTCTGCTTTTTCTAGATGTATAGTAAACATCCAGGGCATGTGATTCTATAAGGCAATTGCTCTCCAATCAAAAGAAATTCATCACTTATTGCAAGATGAAATGAAGTAGGTTGTATTAGCAAAAAGGAAAGCATTATGACTAGTCACCATGGGGCTGGCTGTACTCAACCTTGCAAATCATCTGAAAGAACAGTTTCTTTTTATATTGTCAACCGAGGACAAAAGACAGCAGCAGTGGAGATAATCAGTACAAAATAAAACCATTTTAGAGTGTACAGTATTCTATTATTTTTTCTGAAGCATAGTCACTTACTGATTACGTTTTTCCAAGGCTGGTATTACAAGTTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACAAGATACCAACCAACTCAGTTAGTGTGGAAGCAGGGAGGGTCATATTGGTATGTGATTAACATTAGAGTTTGAAGAGCCAGATGTACGTTGTTAAGGATCAATGAAAAAAATTTAGCCAAGCAGATAAAATTCAATTTCTTCAAATAAATTATTACTTACTTGAGGACAAGGATGATTTCTGGGTACAGTATCATTCCAGAGAATTTAAGTATTCCAAAACGAAACTGGGAATATTGAGGTTGGAAGATACATTTGATTTCACAAATCCTTTCTCTAAGAAACACTTTTGAATTACCTGTTCCATAACTGTTTTCTATTTACTTCAAATGGTTTTATAATAATTTTAGAATTATTTTTAAAAGACAGTACCTAAGAATCAGAGAAACTAAGTGGAGAAAATCATGATAGTATTTCCCCAAGTGTATTCTATGGAACCCCATTTCTGTGAGAATTTTAATAAAAGGTTTCAGGGTTATTTAAATTTAAGAAATGATCATTTTGGAGGTTCAGATGCCACACTGGTAGACTGTCAATTGGGCTGAACTGTTCTCATATGAAACATCTTGTTTAAATTTATTCTAATATTATAATTTTTGTGACCATGGAACCTTGGTCTATGAACAATAGTTCAGGAAACCCTACTATAAGGTTTATCAAATGGTCTCATAAACAGTTACTTATTCAAGCACGCCAAAGCTCAGTGAAAAGTATTTTTCACCCTTACTCTTTCTCGTGTCATTCAAAGAGAAGTTTTGATGTAGTGTATTTATTTGTAGGGAGTAATGAACAGATCCATTTCACAGTAGACTTTGTGCTCTAG
Seq C2 exon
GTGATGCAGCTAATTGCCCCAGTTTGGAAAACATGGACTTGGATGAATTGTCTTTGTTTGGACCCCTGCCTGGGCCAGGCCCAGCCCTTGTGGACCGGAATCGATTATCCAGTGAGAGCAGCTGTAAGAGCTGGCTGAGCTCCATGACGATGGACAGTGAAGATGGCTACCAGACGTGTGTGTCTGAGGACTCCAGCAGGGGTGCCTTCAGTCGGCAGACGAGTACAGATGATGAGTGCTTTATCCCCAAGGAGGGGGATGATTTTCTGAGGAGGTCATCTTCAAGGAGGAACCGGAGCATCAGTAACACCAGCAGCGGATCCATGTCTCCCTTGTGGGAGGGCAACTTATCAAGCATGTTTGGGACCCTGCCCCGGAAGAGCAGAAAGGGAAGTGTCCGAAAGCAACTCTTGAAATTTATCCCTGGCCTTCATCGTGCTGTGGAAGAGGAAGAAAGTCGCTTTTGACGGATTGTGGTGTCCTTTCAAATTAGCTTATTTCACAAATATCTCTAGACTCACCCAGATCCCAGCTTGGTGGGAAAGTGCAGAAGAATTGCAAAACTGACATCCCATTTCACAGCAATAGTGACCTTTATTTAAATTGTTGTGTTATAGTTTATGCTTCTTAAATCATTTTTCAACCTAAACAGCCAATTTCTAAGCAGACAGGAAAACTAAATAATAAGTTAATTAATATAACAAAGATGCAGGTTCCTGCTCATTCCAGTAATGTCTTTGAAAGCAAAACTAATATTTATTTTCTAGATTATCCCTGTGAATAATTGAGAACTTTTTGGAGTCAAGTATGAATAAAGGTGTGGCAGAATATAATAATCTGGACTATTTTCTATAGGATAATTGCTGGGTTATAAAATCTTAGGTTTGCTTATGCCCAGTAGCTCCTGCGGAGGCTTAATAATAGGCAATTTTGAATTTGTTCAAACCTGTAATGGCTTGTAAACAAAGATGACCATCAGCTGTTTCTCACATCTATAGTGACAATAAAGCGGGAAGTATAAGATTTAATAGGAGGGGTTAAGGTTCATGAGAACCATGGAAAGATGTGGTCTGAGATGGGTGCTGCAAAGATCATAATAAAGTCATTTTTATAGACAGTCTAAACAAAATGGGTGGGGATGTCGTGTTTTTTGCCCAATTCAGCTTTTGTTCTGCCTGAACATTAATGGCAAGTCTAGAACTCTCCGAATCCTACAGCTTTGTAATTTTTTTTCTACAAATGTCTAACATCCAAAACTGAGGGTTGGGAAAAGGACTTCCCTCCTGTAGTTTTTTTCATATTACTTCTCACTTTATATCTTATATTCTAAATAGCTATCACCTCAGCAGTCTTTTGCCTATTGGTTATGTTAGTATCACATTACTTCTAGCCTTTCAATTACTCCATGTTTTATTTAATATCCATTGAAGTCTATGAATTCTCTGTTCTGGTGGCACAGCTATTCATAACCTATATTCTAGAGTAGACAATCTGGACTATGTAATAAATAGTCTGCTGATTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115165:ENST00000264192:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.265
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development