GgaINT0046070 @ galGal3
Intron Retention
Gene
ENSGALG00000012545 | CYTIP
Description
NA
Coordinates
chr7:37852727-37853847:-
Coord C1 exon
chr7:37853781-37853847
Coord A exon
chr7:37853188-37853780
Coord C2 exon
chr7:37852727-37853187
Length
593 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TCCTTGACCTCTGCTTCCAGGGG
3' ss Score
9.2
Exon sequences
Seq C1 exon
CAAACTCTGCAGCAGAAGTGGGTGGAGTTGCGCTCCCTGCACTTACAGGAACAGCGTTTGCTGCATG
Seq A exon
GTGAGTCTTTGTTTCTGGGTGGGAAACCGCAGTGCTGCCAAGACCTCTGGGGGAAGCTGGGGCTGAGCAGCACCGGGCACTCCTCTAACCTGGTTTCCATCTGCTTTCTTTTTTTCCACCTCAATGAGGGCATGGGCTGACCCCTGGGGAAGTTTTCTATCAGTGTCTGATGAATTTGGGTGCTAGGCTGACGCGTGAGTTCTAGGAGAGGAGTTCGCGTGGGTTGGAAAGCTTCTTTTCTATTCTGTTTTTTAAAGTGGACTTAAAAGTAAACCAAGCCCTCCTCTCCTTATGGGCTGCCTCGGGAGAAACCTTGCTGCATTCTGGGGCAAGGCAGCAGTAGAGTCCCATGTAGCTGGAAACATGGGTGAGATGTGCTGAGTGAGACATTGCTCAGCCCCACGGTGGGGTGGAAGGGCAGGAGGCCGGGCCAGGACGAAGGCCCAGCTGGTGGCTTTGGCTGAGAGGAGAAAGGAGCCAGGCTGACCTCCCTGCAGCAGACCTAGGCAGCTCTGCAGAGTCGCAGGCTGTGTCTGCTTGCAGGAGCTCACTGATGCTGTTGAATAATGCTCCTCCTTGACCTCTGCTTCCAG
Seq C2 exon
GGGAGGTGAATGACAACGCTCTGCTGGAGCTGGAAGAGGCCAACTTATTTGGGGACTGCACGCCAGGACCGCTCTCTCCGACCAAGACCCGCTTCTCCAGTGAGAGCAGCTCGCGGAGCCGCCTGAGCTCCATGACCCTGGACAGCGAGGACAGCTTCTACCAGAGCGGTGCCTTCGACGACTCCGCGGCAGAGAGCCTGAGCCGCCAGTCCAGCATGGACGACGACTGCTTCCTTCCCAGGGACGGCGACGGCACGGCCGGGAGGTGCTCCCTGCGCAGGCACCGCAGCATCAGCCTGGCCAGCAGCGGCTCCATGTCCCCGCTGTGGGAGAGTGGCGGCAGCTCCAGCAGCTTCGGGACGCTCCCGAGGAAGAGCAGGAGATCGAGCGTCCGAAAGCAGCTCCTGAAGTTCATCCCGGGCCTTCACCGGGCGCTGGAGGAGGAGGAAAGCCGGGTGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012545:ENSGALT00000020489:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.320
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGAAGTGGGTGGAGTTG
R:
CTGATGCTGCGGTGCCTG
Band lengths:
353-946
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]