RnoINT0044730 @ rn6
Intron Retention
Gene
ENSRNOG00000004772 | Cytip
Description
cytohesin 1 interacting protein [Source:RGD Symbol;Acc:1307990]
Coordinates
chr3:44150992-44156461:-
Coord C1 exon
chr3:44156395-44156461
Coord A exon
chr3:44151996-44156394
Coord C2 exon
chr3:44150992-44151995
Length
4399 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
GACTCTTCTCTTTACTGTAGGAG
3' ss Score
9.28
Exon sequences
Seq C1 exon
CAAACCTTGAAGAAAAAATGGGTGGAGCTCAGGTCTCTGCACTTACAGGAACAGCGCCTGCTGCATG
Seq A exon
GTAAGCCCAATTTCCTGCCAGGAAACCACATTCTCGTCACACCCTCTCCGAGTTTCTGCCTCCAAATATTTTCAGAGTATCACTATTACAGTAAAAGTTTGCTTAGCACCAATGAAGGCTATGGCTCTGTGTTTTGCTGGGATGAATGCTGAGGTGATGGTGCTTGGAGGAGGTTGAGTCACACTACACTCTCTTCTCCATACAAACTACATATGAATATGAAAACATGCATGGACACGGGGATGTATGCATTTGGAAGAGGTGACCAGTGATTGGAGAAGACCCAGAGGAAAAATTGCCTGACATTCATCAGCCACTGAATTAGATTTCTGAAAATGATTCTGGCTGGGGCTAGTCAACAGAAATGGCTACGTATTTTATTGGTAGAGCAACAACAGTTTTCCAAATTACATTAGTTATGTATGAAGGGAATCTCAGAACCAAGACAGACATGCAAGATTGTTCTGTTAAGATGCATTTGCTATCTATGCGTTTTGAAGCAAGGAGTTAAATATAGTCAGCTGGTTTGTTCTTTGCTATGTCACTTGAGGCGTGAACTTCGTTTTTAGGTCAGTTGAGACAGGGTCCTGCTATATGGCCCTGCCCGTTCTGGTGCTCACTAAGTAGTCCAAACAAAACTCCTTATGCCTTAGCCTCCCAAGCTTGGAAATGTCAGGCACGTGCCACCATAACTGGTAGGAGGGAGCACTACACACAAATAATTTTCTGGAGTCACTATCTGTATGGGCTGGAATGTGGTTTATCTCTTCTTTAGGGAACATTCAGCTAGCCTTCATTTAACAACTGAAATATTTGTTCAAATGATAACTACTTGGCAGAAAAAGATTCAACTTAAAAATAATTTAAAATTGAGTCATAAAACCACAAAAATGTACAAATTCACAAATAACACGTATGTATGATATATGATATATAATGTGGGCATTGTAGGATGTTTAAGTCAAGATAAACTAGACATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTACAGTATATCCCTTCTAGCTTTTGGGTGTTATAATAGATTTCTTGTTAGCTGTAATCACCCTACCATGTAACACACCAAAGTTCTCACTCTACCTAGTTGTAATTAGCGTCCATAGACTGAGGTGTTGGGACATCTTTCTCTTTGCTGGCCAGGCTCTGGTAGGCACCATTCCACTCTCAACAACCATCAGAACATTTCTTAGATTGCACCCATAATGATATGATTTCCTATTTATGTACTTGTACTGGTATTTTTTTCATTTAACACATCCATGTTCATACATGTTAGCACAAATATTTTTTTCTTTTGTTTTTGTGGGTGAATGGCATTTCACTCTGCATCTACAGTATTTTCTTCCTCCATTTGTCAGTTGACAGATATGTTTGCATATCCCATGTTTTGCCTATGGTGAATAAGATGAGCTTGTAAGCATAGGTTTTGTTGAAACACCGATTCTGTTTCCTGTGGATCTACATGCACTAGTGACAGTACTGGATTATATGGCGGTGTGCTGGTGTTTGTTTGTTTGTTTGTTTTGTGGAGCTTCCATGCAGTTTTCCACGGCAGCTGAACTGTGTGAGGTTGTTTTTCCCCCAGCTTCGCCACTGATTTTTATCTTGTGTCTATTTGGTATGAACATCTTACAAGGGTGAGTGACTCTCATTGTGTTTTTAATGTGTGCTTGTCAGTTGATTAATGATGCCACACATTCTTCTATACCTGTTGGCCAATTTCATATCTTCTTCTGATAAATATCTGTCCAAGTCTATTCAACAATGCATCTTATAGTCTTTTATTTTTTTTCTGTCTTCCGAAGATCCTTTATCTTCTTAATTATTGCTTAGGCGCTGATTAACGGTTTAGAGACTTGATTTTCATTTTCAACTAGACAAGTTTGAAAGTTGGGCAAGTTACTTCTCTTTTTAAAATTATTTATTTATTCTGTACACACACACACACACACACACACACTTTTTGCCACAGTGTGTCTGTGTGAAACGTGTTATGAGAGTCAGTTCTCTCTTTTGACAATATGGCTTGCAGGGGTTGACCTCATGTTGTCAGGTTGGTCCTTACTCACTGAGTCATCTCACTGGCCTGCTTTTCTATTTTAAGAATTTCAGTTAATTTTTGTTGTTGCTGCTGCTTTGAGAGAGGTCTGTTATGTTGAACGCCTCTTTGGCTCAGCTTTCTGGTGCTAACTACCAATACAGGTACCGTCCTGCCCACCTCTGTCACACTACATTCTGGAAAAATCAGAAGAATTTTTGGCTGCAGCAGGGATAGGGGGTTTGCTTGTTTTGAGAGAGAGAGAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACAGAGGCAAAGGGAGACAAAGAGAAAGACACAGACAGACAGAGAGACAGATACACACAGAGAGCAAGAGAGAGAAAGAGAGAGAGATAGAGAGAGACAGAGAGAGAGAAAGAGAGAACAGAGGCAAAGGGAGGCAAAGAGAAAGACACAGACAGACAGACAGACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACAGAGGCAAAGAGAGGCAAAGAGAAAAACACAGACAGACAGACAGACAGACAGATACACACAGAGAGAACAAGAGAGAGACAGAGAGAGAGACAGAGAGAGAGAGAAAGAGAACAGAGGCAAAGGGAGGCAAAGAGAAAGAAACAGACAGACAGATACGCATACACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGATATTGAGAGATTGAGAGAGAGAGAGAGAGAGAGAGAGATTGAGAGATTGAGAGAGAGAGAGAGAGTGTGTGTTTCTTGAAGCCTTGTTCAGCTTCCTGGCTTTCATAGACACAGAGTGTTCCAGAAGCCTTTGCTGAACTACTGAAGGTTCCTGAACAGCCCAGTGTACAGTTTCCACGAGTACAGGGACAGTCTTGAGTAGATCTAATATCAGGAGATATATTGCACATTTTTAAGGGACTAGAGGTGTTCTTTCATTTGCTTTTTCTAGAACTAGAGGAAGTGCCCAGAACACCAGGGTCTATCAAGCAACTGATCTTTCATCTGGATGTATCTGCTCATTGTAAGATTAAAACAAGCAGGTTGTAGTAACAGAAAGGAAAGCACTGTGTAGACTGGCTGTGCTTGGCTTCACAGATCAAGTGCGGGTAGAGCAGAGTCTCCTACCTTGTCAACCCGAGCCACAGGAGAGCAGAGTAAAGAGGACTAACACAGGATGCCTTTTGGAGGGCTGGGAACCCTGTGCCTTTTTCGAAACAGACTCACATTCTTAGTTATGGTTTTCTGAGCACACTAGCTGGCCAAACAACGAGAAGCAGGTGGGCAGGGGAGGAGAATGTGACTCACAGTTCAGTTTGGGGAACCCATGTGTGGGTTGTGAAGCACTGACCAGAAAACTTGGCCAAGCAGCTAGAACTCTGAGGACAGAGATGCTTTCTAAGCATCCTAGAACATGGCAGCCATTCTAAGAGGAAATTAGAAATATCGAGACTGGGAGGTATCATTGATTTCATAAGCCTTCTTATAAGCATGTGTTCTGATTTGTAGCTGTTTTTCCCACACACTTTAGATAGCTTTATAATAAACTTCCAAGTCTTTACAGAGACAGATAATGAGAACCAGAGAAGAGTTTATTTTCACCTCCCTTCTGTGAGCATTTTCATAAGCATTTCCAGGGTTACACAATTTAAGCAATTAGCACTTGGAGGTTCACAAAGTCACATTGTCTTAGCGTCAGTTGTGTTGAACTGATTTCACGTCAAGTACGCTGCTATCTGCCACTAAGATAAGTCAGCTTACAAAAATGGAAGTTGTATTCGACTCAGTGTTCAAAGGTTTCAGTCTATAATGAACTGGCTTGAGTCTGTGATAGTTCATGGCAGAAACACTCAGCAGACTAAAATTGCTCTGCTAGTGGCTAGAGAGTGAGAGAAAAAAATGGGGCATGACACAGAAGTTTTAATCTAAGACTGGGTCCCCAATGACCTAAATTTTCTGGGGAGGTAACATCTTCGACAGTTTTCACCATCTCCCAATAGCATCTCCATTAGCATCTCCAGGTGAGCCTCCTGGAGTACATTCTAGATCTAAGCTATGGGCATGAATTATCTCGTTTAAATGTAGTCCCTTAGTAACTAGTCCATGAATGCTAGTTTGGGGAAGCCTCCTAACCATATTTGTACAAGTGAAAACTTGGGCCAAAGTGTTTGTTCTTCCTCTCTTGTGTTCTTTTAACTTGGGTGTGCTTTCTTGTAGGGACTGGTGGTTGAATCCATCTCACTATAGACTCTTCTCTTTACTGTAG
Seq C2 exon
GAGATGCGGCTAACTCCCCAAATTTGGAAAACATGAACCTCGATGAGTCCTCTTTGTTTGGAAATCTACTGGGGCCGAGTCCAGCCTTCCTGGACCGGCCCCGATTGTCCAGTGAGAGCAGCTGTAAGAGCTGGCTGAGCTCCCTCACGGTGGACAGTGAGGATGACTACGGTACCAGCGTGTCCGAGGACTCCATCCGGGGCGCTTTCAGTCGGCAGACCAGCACCGACGATGAGTGCTTTCACTCTAAGGATGGGGATGAAATTCTAAGGAATGCTTCTTCCAGGAGAAACCGGAGTATCAGTATCACTAGTAGTGGGTCCTTTTCTCCTTTGTGGGAGAGCAATTACTCAAGCGTGTTTGGGACTCTGCCCCGGAAAAGCAGACGGGGAAGTGTCCGGAAACAAATTTTGAAATTCATCCCTGGCCTTCATCGTGCTGTGGAAGAGGAAGAGAGTCGCTTTTGATGGGTGGCAGAGACCTTTTGAATCGTCTCATCTCGTTTCACAATCCTCCACCTGCCAAGATGAACTCCTGGCTTAGTGGGAAAGTGCAGATAGAGTGTGAAGCTTACATCCCATTTCAGGGCAGCATTGACCTTTAAATTCTTAAACTGTTATTTTGGGGTCTTATATCAGGATTCTGGTTGTTGTTGTTGTTTGTTTGTTTTTGTTTTTTTTCCCCAATCATTAGAGCTCAAGTTCTAAGCTGACATCAGGGGAGGAAAGTAATAGGTTAAATAATGTAATAATATGTCTGTTCATTTTAATGCTGGCCATGAAAGTACAAAAGTATTTATTATACGAACTATGCATGTAAAACGTGGAGATTTCTTGGAGTCACGTGTGAATATGGACTGACAGAATATAATTATTGGGTTGCTTTTCATATGTTAATTCGATAAACCACGAAACCTTGTATTTGGTTAATTTACTCAGTAGCCTCTGAGGGAGCTACCACAAGAGAGAATTAAAGTTGCTTTCAAACCATTAAAGGAACATATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004772:ENSRNOT00000006387:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.168
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]